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Report for CCDS20255.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20255.1 Public Mus musculus 6 Reg3a 23 108 98 CCDS HistoryNCBI Gene:19694Re-query CCDS DB by CCDS ID:20255.1Re-query CCDS DB by GeneID:19694See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20255.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101272.2 ENSMUSP00000098829.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101272.2Link to Ensembl Protein Viewer:ENSMUSP00000098829.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000101272Re-query CCDS DB by Protein ID:ENSMUSP00000098829
Original member Current member NCBI NM_011259.1 NP_035389.1 Accepted alive Link to Nucleotide Sequence:NM_011259.1Link to Protein Sequence:NP_035389.1Re-query CCDS DB by Nucleotide ID:NM_011259Re-query CCDS DB by Protein ID:NP_035389Link to BLAST:NP_035389.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035389.1 175 O09037 175 100% 0 0

Chromosomal Locations for CCDS 20255.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 78381088 78381163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 78381897 78382015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 78382214 78382351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 78383172 78383298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 78383541 78383608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (528 nt):
ATGCTGCCTCACCTGGTCCTCAACAGTATTTCCTGGATGCTGCTCTCCTGCCTGTTGTTTGTATTTCAGG
TACAAGGTGAAGACTTCCAGAAGGAAGTGCCCTCTCCACGTACCAGCTGCCCCATGGGTTACAAGGCTTA
TCGCTCCCACTGCTATGCCTTAGTTATGACACCTAAATCCTGGTTTCAAGCAGATCTGGTCTGCCAGAAG
AGACCCTCAGGACATCTCGTGTCTATTCTTAGTGGAGGTGAGGCTTCCTTTGTGTCCTCCTTGGTGAACG
GCAGAGTGGACAACTACCAAGACATCTGGATTGGGCTCCATGATCCAACAATGGGTCAACAACCCAATGG
AGGTGGATGGGAGTGGAGTAACTCCGATGTGCTGAATTATCTTAACTGGGATGGGGATCCTTCCTCTACT
GTCAACCGTGGTCACTGTGGGAGTCTGACAGCAAGTTCAGGGTTTCTGAAGTGGGGAGACTATTACTGCG
ATGGGACATTACCATTTGTCTGCAAGTTCAAGCAGTAG

Translation (175 aa):
MLPHLVLNSISWMLLSCLLFVFQVQGEDFQKEVPSPRTSCPMGYKAYRSHCYALVMTPKSWFQADLVCQK
RPSGHLVSILSGGEASFVSSLVNGRVDNYQDIWIGLHDPTMGQQPNGGGWEWSNSDVLNYLNWDGDPSST
VNRGHCGSLTASSGFLKWGDYYCDGTLPFVCKFKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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