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Report for CCDS20302.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20302.1 Public Mus musculus 6 Nat8f2 23 108 98 CCDS HistoryNCBI Gene:93673Re-query CCDS DB by CCDS ID:20302.1Re-query CCDS DB by GeneID:93673See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20302.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045008.7 ENSMUSP00000044587.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045008.7Link to Ensembl Protein Viewer:ENSMUSP00000044587.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000045008Re-query CCDS DB by Protein ID:ENSMUSP00000044587
Original member Current member NCBI NM_053096.3 NP_444326.2 Accepted alive Link to Nucleotide Sequence:NM_053096.3Link to Protein Sequence:NP_444326.2Re-query CCDS DB by Nucleotide ID:NM_053096Re-query CCDS DB by Protein ID:NP_444326Link to BLAST:NP_444326.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444326.2 238 Q8CHQ9 238 100% 0 0

Chromosomal Locations for CCDS 20302.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 85867662 85868378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGGCTGCTTATCACATCCGACAGTACCAGGAGAAGGACCACAAAAGGGTCCTGGAATTGTTCTCCAGCG
GCATGAAGGAGCTTATTCCTGCTGCCATCCGACAGATGCTGACACTGCCTCATTCTCTCTTGCTCTTACC
TGGAGTGCCTGTGACCATAGTATTGATGTCTGCCTCCTGGCTCCTGGCCACATTATACAGCTTCCTCTTT
CTCCTTTGCCTGTGGCTTATTTTCTGGATTTCTTGCAGAAATTATGTGGCTAAAAGTTTGCAGGCAGATC
TTGCTGACATCACCAAGTCTTACCTGAATGCACATGGCTCCTTCTGGGTGGCTGAGTCTGGAGACCAGGT
AGTTGGCATGGTGGGTGCTCAGCCAGTCAAGGACCCTCCATTAGGGAAGAAGCAGATGCAGCTCTTTCGC
CTGTCTGTGTCCTCACAGCATCGAGGACAGGGAATAGCAAAGGCACTGGTCAGAACTGTCCTCCAGTTTG
CTCGGGACCAGGGTTACAGTGATGTTGTCCTTGAGACTGGCAGTGTGCAACATAGTGCTCAGGCTCTCTA
CCAGGCCATGGGCTTCCAGAAGACAGGCCAGTACTTTGTCAGTATAAGCAAGAAGTTAATGGGTCTTTCT
ATTCTTCAATTCTCTTACTCTCTCCCTTTTGCTTCAGGACCAGGGTATAGTGGGAAATATTTAAAAAAAG
GTCCCATTCCATGCTAG

Translation (238 aa):
MAAYHIRQYQEKDHKRVLELFSSGMKELIPAAIRQMLTLPHSLLLLPGVPVTIVLMSASWLLATLYSFLF
LLCLWLIFWISCRNYVAKSLQADLADITKSYLNAHGSFWVAESGDQVVGMVGAQPVKDPPLGKKQMQLFR
LSVSSQHRGQGIAKALVRTVLQFARDQGYSDVVLETGSVQHSAQALYQAMGFQKTGQYFVSISKKLMGLS
ILQFSYSLPFASGPGYSGKYLKKGPIPC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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