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Report for CCDS2039.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2039.1 Public Homo sapiens 2 LIPT1 24 110 108 CCDS HistoryNCBI Gene:51601Re-query CCDS DB by CCDS ID:2039.1Re-query CCDS DB by GeneID:51601See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 2039.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393471.2 ENSP00000377114.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393471.2Link to Ensembl Protein Viewer:ENSP00000377114.2Re-query CCDS DB by Nucleotide ID:ENST00000393471Re-query CCDS DB by Protein ID:ENSP00000377114
Original member Current member EBI ENST00000393473.6 ENSP00000377115.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393473.6Link to Ensembl Protein Viewer:ENSP00000377115.2Re-query CCDS DB by Nucleotide ID:ENST00000393473Re-query CCDS DB by Protein ID:ENSP00000377115
Original member Current member EBI ENST00000651691.1 ENSP00000498546.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000651691.1Link to Ensembl Protein Viewer:ENSP00000498546.1Re-query CCDS DB by Nucleotide ID:ENST00000651691Re-query CCDS DB by Protein ID:ENSP00000498546
Original member Current member NCBI NM_001204830.2 NP_001191759.1 Accepted alive Link to Nucleotide Sequence:NM_001204830.2Link to Protein Sequence:NP_001191759.1Re-query CCDS DB by Nucleotide ID:NM_001204830Re-query CCDS DB by Protein ID:NP_001191759Link to BLAST:NP_001191759.1
Original member Current member NCBI NM_015929.4 NP_057013.1 Accepted alive Link to Nucleotide Sequence:NM_015929.4Link to Protein Sequence:NP_057013.1Re-query CCDS DB by Nucleotide ID:NM_015929Re-query CCDS DB by Protein ID:NP_057013Link to BLAST:NP_057013.1
Original member Current member NCBI NM_145197.3 NP_660198.1 Accepted alive Link to Nucleotide Sequence:NM_145197.3Link to Protein Sequence:NP_660198.1Re-query CCDS DB by Nucleotide ID:NM_145197Re-query CCDS DB by Protein ID:NP_660198Link to BLAST:NP_660198.1
Original member Current member NCBI NM_145198.3 NP_660199.1 Accepted alive Link to Nucleotide Sequence:NM_145198.3Link to Protein Sequence:NP_660199.1Re-query CCDS DB by Nucleotide ID:NM_145198Re-query CCDS DB by Protein ID:NP_660199Link to BLAST:NP_660199.1
Original member Current member NCBI NM_145199.3 NP_660200.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145199.3Link to Protein Sequence:NP_660200.1Re-query CCDS DB by Nucleotide ID:NM_145199Re-query CCDS DB by Protein ID:NP_660200Link to BLAST:NP_660200.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191759.1 373 Q9Y234 373 100% 0 0
NP_057013.1 373 Q9Y234 373 100% 0 0
NP_660198.1 373 Q9Y234 373 100% 0 0
NP_660199.1 373 Q9Y234 373 100% 0 0
NP_660200.1 373 Q9Y234 373 100% 0 0

Chromosomal Locations for CCDS 2039.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 99161958 99163079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGCTGATCCCATTTTCAATGAAGAATTGCTTCCAGTTACTTTGTAACTGCCAGGTCCCAGCAGCTGGCT
TTAAAAAAACAGTAAAAAATGGGCTCATTTTACAGTCAATTTCCAATGATGTCTATCAAAATCTGGCTGT
GGAAGACTGGATCCATGACCATATGAATCTAGAAGGCAAACCAATTCTATTCTTTTGGCAGAATTCTCCC
TCTGTTGTAATTGGTAGGCATCAAAATCCTTGGCAGGAATGTAACCTGAATCTAATGAGAGAAGAAGGTA
TAAAACTGGCTCGGAGAAGAAGTGGAGGAGGAACAGTCTACCATGATATGGGTAATATCAATTTGACTTT
CTTTACAACCAAAAAAAAGTATGATAGAATGGAAAATCTGAAATTAATTGTGAGAGCTCTGAATGCTGTC
CAACCCCAGCTGGATGTGCAGGCTACCAAAAGATTTGACCTTTTACTTGATGGACAGTTTAAAATCTCAG
GAACAGCTTCTAAGATCGGCCGGACTACTGCCTATCACCATTGCACTTTATTATGTAGTACTGATGGGAC
GTTCTTGTCTTCTTTGCTAAAGAGCCCTTACCAAGGGATCAGGAGCAATGCCACTGCTAGCATACCTTCC
TTAGTGAAAAATCTTTTGGAAAAGGATCCCACTCTGACCTGTGAAGTACTAATGAATGCTGTTGCTACAG
AGTATGCTGCTTATCATCAAATTGATAATCACATTCACCTAATAAACCCAACGGATGAGACACTGTTTCC
TGGAATAAATAGCAAAGCCAAAGAACTGCAAACTTGGGAGTGGATATATGGCAAAACTCCAAAGTTTAGT
ATAAATACTTCCTTTCATGTGTTATATGAACAGTCACACTTGGAAATTAAAGTATTCATAGACATAAAGA
ATGGAAGAATTGAAATTTGTAATATTGAAGCACCTGATCATTGGTTGCCATTGGAAATACGTGACAAATT
AAATTCAAGTCTTATTGGCAGTAAGTTTTGCCCAACTGAAACTACCATGCTAACAAATATATTACTTAGA
ACATGTCCACAAGACCACAAACTAAACAGTAAATGGAATATTCTCTGTGAAAAAATTAAGGGAATAATGT
GA

Translation (373 aa):
MLIPFSMKNCFQLLCNCQVPAAGFKKTVKNGLILQSISNDVYQNLAVEDWIHDHMNLEGKPILFFWQNSP
SVVIGRHQNPWQECNLNLMREEGIKLARRRSGGGTVYHDMGNINLTFFTTKKKYDRMENLKLIVRALNAV
QPQLDVQATKRFDLLLDGQFKISGTASKIGRTTAYHHCTLLCSTDGTFLSSLLKSPYQGIRSNATASIPS
LVKNLLEKDPTLTCEVLMNAVATEYAAYHQIDNHIHLINPTDETLFPGINSKAKELQTWEWIYGKTPKFS
INTSFHVLYEQSHLEIKVFIDIKNGRIEICNIEAPDHWLPLEIRDKLNSSLIGSKFCPTETTMLTNILLR
TCPQDHKLNSKWNILCEKIKGIM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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