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Report for CCDS20420.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20420.1 Public Mus musculus 6 Il17re 23 108 98 CCDS HistoryNCBI Gene:57890Re-query CCDS DB by CCDS ID:20420.1Re-query CCDS DB by GeneID:57890See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20420.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058548.13 ENSMUSP00000062103.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058548.13Link to Ensembl Protein Viewer:ENSMUSP00000062103.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000058548Re-query CCDS DB by Protein ID:ENSMUSP00000062103
Original member Current member NCBI NM_145826.6 NP_665825.2 Accepted alive Link to Nucleotide Sequence:NM_145826.6Link to Protein Sequence:NP_665825.2Re-query CCDS DB by Nucleotide ID:NM_145826Re-query CCDS DB by Protein ID:NP_665825Link to BLAST:NP_665825.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_665825.2 637 Q8BH06-1 637 100% 0 0

Chromosomal Locations for CCDS 20420.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113458895 113459026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113459360 113459375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113462279 113462376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113462594 113462753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113462828 113462967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113463953 113464021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113464761 113464827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113465715 113465890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113465980 113466027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113466109 113466154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113466253 113466407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113468437 113468505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113468906 113468957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113469030 113469128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113469557 113470143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1914 nt):
ATGGGGAGCCCCAGACTGGCAGCCTTGCTCCTGTCTCTCCCGCTACTGCTCATCGGCCTCGCTGTGTCTG
CTCGGGTTGCCTGCCCCTGCCTGCGGAGTTGGACCAGCCACTGTCTCCTGGCCTACCGTGTGGATAAACG
TTTTGCTGGCCTTCAGTGGGGCTGGTTCCCTCTCTTGGTGAGGAAATCTAAAAGTCCTCCTAAATTTGAA
GACTATTGGAGGCACAGGACACCAGCATCCTTCCAGAGGAAGCTGCTAGGCAGCCCTTCCCTGTCTGAGG
AAAGCCATCGAATTTCCATCCCCTCCTCAGCCATCTCCCACAGAGGCCAACGCACCAAAAGGGCCCAGCC
TTCAGCTGCAGAAGGAAGAGAACATCTCCCTGAAGCAGGGTCACAAAAGTGTGGAGGACCTGAATTCTCC
TTTGATTTGCTGCCCGAGGTGCAGGCTGTTCGGGTGACTATTCCTGCAGGCCCCAAGGCCAGTGTGCGCC
TTTGTTATCAGTGGGCACTGGAATGTGAAGACTTGAGTAGCCCTTTTGATACCCAGAAAATTGTGTCTGG
AGGCCACACTGTAGACCTGCCTTATGAATTCCTTCTGCCCTGCATGTGCATAGAGGCCTCCTACCTGCAA
GAGGACACTGTGAGGCGCAAAAAGTGTCCCTTCCAGAGCTGGCCTGAAGCTTATGGCTCAGACTTCTGGC
AGTCAATACGCTTCACTGACTACAGCCAGCACAATCAGATGGTCATGGCTCTGACACTCCGCTGCCCACT
GAAACTGGAGGCCTCCCTCTGCTGGAGGCAGGACCCACTCACACCCTGCGAAACCCTTCCCAACGCCACA
GCACAGGAGTCAGAAGGATGGTATATCCTGGAGAATGTGGACTTGCACCCCCAGCTCTGCTTTAAGTTCT
CATTTGAAAACAGCAGCCACGTTGAATGTCCCCACCAGAGTGGCTCTCTCCCATCCTGGACTGTGAGCAT
GGATACCCAGGCCCAGCAGCTGACGCTTCACTTTTCTTCGAGGACATATGCCACCTTCAGTGCTGCCTGG
AGTGACCCAGGTTTGGGGCCGGATACCCCCATGCCTCCTGTGTACAGCATCAGCCAGACCCAGGGCTCAG
TCCCAGTGACGCTAGACCTCATCATCCCCTTCCTGAGGCAGGAGAATTGCATCCTGGTGTGGAGGTCAGA
TGTCCATTTTGCCTGGAAGCACGTCTTGTGTCCTGATGTCTCCCATAGACACCTCGGGCTCTTGATCCTG
GCACTGCTGGCTCTCACCGCTCTAGTGGGTGTAGTTCTGGTCCTCCTCGGCCGGCGCCTACTGCCAGGCT
CCGGTCGAACAAGGCCAGTTTTACTCCTACATGCAGCGGACTCAGAGGCACAGCGACGCCTGGTGGGAGC
TTTGGCCGAACTGCTGCGGACGGCGCTGGGAGGTGGACGCGACGTGATCGTGGATCTCTGGGAAGGGACG
CACGTAGCACGCATTGGACCACTGCCGTGGCTTTGGGCAGCGCGGGAGCGCGTGGCGCGGGAGCAGGGCA
CAGTGCTGCTCCTGTGGAACTGTGCGGGTCCCAGCACCGCCTGCAGCGGTGACCCGCAGGCTGCGTCCCT
TCGCACCTTGTTGTGCGCTGCTCCACGTCCGCTGCTGCTCGCCTACTTCAGTCGCCTCTGCGCCAAAGGT
GACATCCCCCGGCCGCTGCGCGCTCTGCCACGCTACCGCCTGCTTCGTGACCTGCCGCGCCTGCTGAGAG
CACTGGATGCTCAGCCTGCCACCCTAGCCTCCAGCTGGAGTCACCTTGGGGCTAAGCGGTGCTTGAAAAA
CCGTCTGGAGCAGTGTCACCTGCTGGAACTTGAGGCTGCCAAAGATGACTACCAAGGCTCAACCAATAGT
CCCTGTGGTTTCAGCTGTCTGTAG

Translation (637 aa):
MGSPRLAALLLSLPLLLIGLAVSARVACPCLRSWTSHCLLAYRVDKRFAGLQWGWFPLLVRKSKSPPKFE
DYWRHRTPASFQRKLLGSPSLSEESHRISIPSSAISHRGQRTKRAQPSAAEGREHLPEAGSQKCGGPEFS
FDLLPEVQAVRVTIPAGPKASVRLCYQWALECEDLSSPFDTQKIVSGGHTVDLPYEFLLPCMCIEASYLQ
EDTVRRKKCPFQSWPEAYGSDFWQSIRFTDYSQHNQMVMALTLRCPLKLEASLCWRQDPLTPCETLPNAT
AQESEGWYILENVDLHPQLCFKFSFENSSHVECPHQSGSLPSWTVSMDTQAQQLTLHFSSRTYATFSAAW
SDPGLGPDTPMPPVYSISQTQGSVPVTLDLIIPFLRQENCILVWRSDVHFAWKHVLCPDVSHRHLGLLIL
ALLALTALVGVVLVLLGRRLLPGSGRTRPVLLLHAADSEAQRRLVGALAELLRTALGGGRDVIVDLWEGT
HVARIGPLPWLWAARERVAREQGTVLLLWNCAGPSTACSGDPQAASLRTLLCAAPRPLLLAYFSRLCAKG
DIPRPLRALPRYRLLRDLPRLLRALDAQPATLASSWSHLGAKRCLKNRLEQCHLLELEAAKDDYQGSTNS
PCGFSCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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