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Report for CCDS20462.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20462.1 Public Mus musculus 6 Tmem72 23 108 98 CCDS HistoryNCBI Gene:319776Re-query CCDS DB by CCDS ID:20462.1Re-query CCDS DB by GeneID:319776See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20462.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056623.12 ENSMUSP00000057942.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056623.12Link to Ensembl Protein Viewer:ENSMUSP00000057942.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000056623Re-query CCDS DB by Protein ID:ENSMUSP00000057942
Original member Current member NCBI NM_178768.4 NP_848883.2 Accepted alive Link to Nucleotide Sequence:NM_178768.4Link to Protein Sequence:NP_848883.2Re-query CCDS DB by Nucleotide ID:NM_178768Re-query CCDS DB by Protein ID:NP_848883Link to BLAST:NP_848883.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848883.2 275 Q8C3K5 275 100% 0 0

Chromosomal Locations for CCDS 20462.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 116695051 116695529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116696807 116696946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116698321 116698392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116701977 116702043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116716508 116716577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGAAGCTCCAGGTATTCTGGACTGGACTGGAGTATACCTGCCGGCTCTTGGGCATCGCTACGGCTGCAG
TGTTGATTGGAGTGGGCACCGAGACCTTCCTCCGGGGGCGGTTCAAAAGCCTGGCCTTCTATCTGCTGTT
TACAGGAGTCACCATCTCTGTGTGTGAAGGGACCTACTTTGTGGCTCAACTCTTGGCCATCTGCTTCAAG
TGCCAGCCGGGGTCTCTGGCACACAGAGCGAAGGAGAGGGCCCACTGGCTGGGCTGCTTCCAGAAGTTCC
TCGCCTACATGCTGCTGTCAGTGGCCTGCTTCCTCCACCCTGTCCTGGTCTGGCATGTGACCATTCCAGG
CTCCATGTTAATCATCACTGGCCTGGCCTACTTCCTGCTGAGCAAGCGAAAGAAAAAAAAGGCTGCTCCA
GAGGTGGCACCCCCCACAGAGCAGTACACAGACCCTTCCAGCAGCGTCGTGAGCACCACAGGCTCTGGGG
ACACTGAGCAAACCTATACTTTCCATGAGGCCTTCAAGGAGGGGCCTGGCTCCTTCTTTATCCACATGAA
GAGCATCCTAAAGGGGACCAAGAAGCCACGTGTCCTGCAGACCCAAGATACCCTAATGGAACTGGCACTG
GAGCCGGCTGACTCCTTGGCCAAGAAAAAGCAGGTACACTTTGAAGACAATGTGGTCAGAATCATCCCAT
CCCTCACTGAAGGTCTGGGTGATAGTGACAGTGAACCAGAAGAAACCAGCTCTGACACAACTCCCATCAT
CCCTCCCTCCCAGACCCCACACTTTCTGCCTTCTCTCATGGCCACTGACCTGTTCTGA

Translation (275 aa):
MKLQVFWTGLEYTCRLLGIATAAVLIGVGTETFLRGRFKSLAFYLLFTGVTISVCEGTYFVAQLLAICFK
CQPGSLAHRAKERAHWLGCFQKFLAYMLLSVACFLHPVLVWHVTIPGSMLIITGLAYFLLSKRKKKKAAP
EVAPPTEQYTDPSSSVVSTTGSGDTEQTYTFHEAFKEGPGSFFIHMKSILKGTKKPRVLQTQDTLMELAL
EPADSLAKKKQVHFEDNVVRIIPSLTEGLGDSDSEPEETSSDTTPIIPPSQTPHFLPSLMATDLF


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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