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Report for CCDS20571.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20571.1 Public Mus musculus 6 Nrip2 23 108 98 CCDS HistoryNCBI Gene:60345Re-query CCDS DB by CCDS ID:20571.1Re-query CCDS DB by GeneID:60345See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20571.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001561.11 ENSMUSP00000001561.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001561.11Link to Ensembl Protein Viewer:ENSMUSP00000001561.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000001561Re-query CCDS DB by Protein ID:ENSMUSP00000001561
Original member NCBI NM_021717.2 NP_068363.2 Updated not alive Link to Nucleotide Sequence:NM_021717.2Link to Protein Sequence:NP_068363.2Re-query CCDS DB by Nucleotide ID:NM_021717Re-query CCDS DB by Protein ID:NP_068363
Current member NCBI NM_021717.3 NP_068363.2 Accepted alive Link to Nucleotide Sequence:NM_021717.3Link to Protein Sequence:NP_068363.2Re-query CCDS DB by Nucleotide ID:NM_021717Re-query CCDS DB by Protein ID:NP_068363Link to BLAST:NP_068363.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068363.2 229 Q9JHR9-2 229 100% 0 0

Chromosomal Locations for CCDS 20571.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 128400113 128400301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128404935 128405084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128406490 128406572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128407354 128407475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128407686 128407738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128407984 128408076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGAGCACCGGGCAAGAGGCCAGGAGAGATGAGGGAGACTCCAGGAAAGAACAGGAAGCTTCGCTTCGGG
ACCGAGCCCACCTGAGCCAGCAGCGCCAACTCAAACAGGCCACCCAGTTCTTGCACAAGGACTCGGCTGA
CCTGCTGCCCCTGGACAGCCTCAAGAGACTCGGCACCTCTAAGGACCTGCAGCCACACAGTGTGATCCAA
AGACGCCTGGTGGAGGGAAACCAGAGGCGGCTTCAGGGGGAGTCTCCCCTGCTGCAGGCCCTGATCCGTG
GCCATGACAGCAGCAGGACCAGTGCGACACAGGTTCCAGCTCTGCTAGTCAACTGCAAGTGCCAGGACCA
GATGCTTCGAGTGGCTGTGGACACAGGGACCCAGCACAACCAGATTTCTGCTGGATGTCTCAGGCGCCTG
GGGTTAGGAAAGAGGGTCCCAAAAGCCCCCGGTGGGGATGTGGCACCTGAGCCACCAACTCAGGTAGAAC
AGCTGGAGTTAGAGCTGGGGCAGGAGACTGTGGCATGCTCGGCCCAGGTGGTGGATGTGGACAGCCCTGA
ATTTTGCCTGGGACTGCAGACCCTGCTCTCCCTCAAGTGCTGCATTGACCTGGACCGTGGAGTGCTTCGG
CTGAAAGCCCCCTTCTCGGAGCTGCCCTTCCTGCCTCTGTACCAAGAACCTGGCCAGTGA

Translation (229 aa):
MSTGQEARRDEGDSRKEQEASLRDRAHLSQQRQLKQATQFLHKDSADLLPLDSLKRLGTSKDLQPHSVIQ
RRLVEGNQRRLQGESPLLQALIRGHDSSRTSATQVPALLVNCKCQDQMLRVAVDTGTQHNQISAGCLRRL
GLGKRVPKAPGGDVAPEPPTQVEQLELELGQETVACSAQVVDVDSPEFCLGLQTLLSLKCCIDLDRGVLR
LKAPFSELPFLPLYQEPGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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