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Report for CCDS20614.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20614.1 Public Mus musculus 6 Prb1a 23 108 98 CCDS HistoryNCBI Gene:381833Re-query CCDS DB by CCDS ID:20614.1Re-query CCDS DB by GeneID:381833See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20614.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087853.3 ENSMUSP00000085159.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087853.3Link to Ensembl Protein Viewer:ENSMUSP00000085159.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000087853Re-query CCDS DB by Protein ID:ENSMUSP00000085159
Original member Current member NCBI NM_198669.1 NP_941071.1 Accepted alive Link to Nucleotide Sequence:NM_198669.1Link to Protein Sequence:NP_941071.1Re-query CCDS DB by Nucleotide ID:NM_198669Re-query CCDS DB by Protein ID:NP_941071Link to BLAST:NP_941071.1

Chromosomal Locations for CCDS 20614.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 132207154 132208568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132209424 132209459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132210453 132210516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGCTGGTTGTCCTGCTCACAGCAGCTTTGCTGGTCCTGAGCTCAGCTCAGAGACAAGATGAAGAGATCA
CCTACGAAGACTCAAATTCTCAGCTCCTAGAGAGGGGAGAGAAGAGCCAAGGATATGGTCATCATTTTCC
AAAACCACCTCCTGGAGGAATGCCCCCAAGACCTCCCAGTTCTGATGAAAATAATGATGGTGATGAAGAT
GGCAGTGAGGAAGATGTGAATAGACCAGAGGGACCACCACAGCACCCTCCTCACCCAGGACACCACCATG
GTCCTCCCCAACAGGGAGGCCCACAGGGTCCCCCTAGGCCGGGAAACCAACAAGGCCCACCCCCTCCAGG
CCCACCCCCACAGGGAAGCCCCCAGCAGAGACCCCCTCAGCCTGGAAAACAACAAGGCCCACCACCACAG
GGAGGTTCTCAGGGACCCCCTATGCCTGTAAACCAACAAGGCCCACCCCCAAAGGGAGGCCCCCAGCAAA
GACCCCCTCAGCCTGGAAACCAACAAGGCCCACCCCCACAGGGAGGCCCCCAGCAGAGACCCCCTCAGCC
TGGAAACCAACAAGGCCCACCCCCACAGGGAGGCCCCCAGCAGAGACCACCTCAGCCTGGAAACCAACAA
GGCCCACCTCTACATGGAGGTCCTCAGAGACCCCCTCAGCCTGGAAACCAACAAGGTCCACCCCCACAGG
GAGGCCCCCAGCAGAGACCTCCTCAGCCTGGAAACCAACAAGGCCCACACCCACAGGGAGGCCTACAGGG
ACCCCCTAGGCCTGGTAACCAACAAGGCCCACCTCCAAAGGGAGGTCCTCAGAGACCCCCTCAGCCTGGA
TACCAACAAGGCCCACCCCCACAGGGAGGTCCTCAGGGACCCCCTATGCCTGGAAACCAACAAGGCCCAC
CCCCACAGGGAGGCCTCCAGCAGAGACCTCCTCAGCCTGGAAACCCACAAGGCCCGCCCCCACAGGGAGG
CCCCCAGGGACCCCCAAGACCTGGTAACCAACAAGGCCCACCTCCACAGGGAGGCCCCCAGCAGAGACCC
CCTCAGCCTGGAAACCAACAAGGCCCACCTCCAAAGGGAGGTCCTCAGAGACCCCCTCAGCCTGGATACC
AACAAGGCCCACCCCCACAGGGAGGTCCTCAGGGACCCCCTATGTCTGGAAACCAACAAGGCCCACCCCC
ACAGGGAGGCCTCCAGCAGAGACCTCCTCAGCCTGGAAACCCACAAGGCCCGTCCCCACAGGGAGGCCCC
CAGGGACCCCCAAGACCTGGTAACCAACAAGGCCCACCTCCACAGGGAGGCCCCCAGCAGAGACCCCCTC
AGCCTGGAAACCAACAAGGCCCACCCCAACAGGGAGGCCCTCAGGGACCTCCTAGGCCTGGAAACCAGCA
AGGCCCACCCCCACAGGGAGGCCCTCAGAGACCTTCTCAGCCAGGAAACCATCAAGGCCCACCCCAGCAT
GGAAACAAAGAACAGCCAAATTACCTGTGGTCACTTTTTGCATAA

Translation (504 aa):
MLVVLLTAALLVLSSAQRQDEEITYEDSNSQLLERGEKSQGYGHHFPKPPPGGMPPRPPSSDENNDGDED
GSEEDVNRPEGPPQHPPHPGHHHGPPQQGGPQGPPRPGNQQGPPPPGPPPQGSPQQRPPQPGKQQGPPPQ
GGSQGPPMPVNQQGPPPKGGPQQRPPQPGNQQGPPPQGGPQQRPPQPGNQQGPPPQGGPQQRPPQPGNQQ
GPPLHGGPQRPPQPGNQQGPPPQGGPQQRPPQPGNQQGPHPQGGLQGPPRPGNQQGPPPKGGPQRPPQPG
YQQGPPPQGGPQGPPMPGNQQGPPPQGGLQQRPPQPGNPQGPPPQGGPQGPPRPGNQQGPPPQGGPQQRP
PQPGNQQGPPPKGGPQRPPQPGYQQGPPPQGGPQGPPMSGNQQGPPPQGGLQQRPPQPGNPQGPSPQGGP
QGPPRPGNQQGPPPQGGPQQRPPQPGNQQGPPQQGGPQGPPRPGNQQGPPPQGGPQRPSQPGNHQGPPQH
GNKEQPNYLWSLFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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