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Report for CCDS20654.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20654.1 Public Mus musculus 6 H2aj 23 108 98 CCDS HistoryNCBI Gene:232440Re-query CCDS DB by CCDS ID:20654.1Re-query CCDS DB by GeneID:232440See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20654.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074556.6 ENSMUSP00000074142.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074556.6Link to Ensembl Protein Viewer:ENSMUSP00000074142.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000074556Re-query CCDS DB by Protein ID:ENSMUSP00000074142
Original member Current member NCBI NM_177688.4 NP_808356.1 Accepted alive Link to Nucleotide Sequence:NM_177688.4Link to Protein Sequence:NP_808356.1Re-query CCDS DB by Nucleotide ID:NM_177688Re-query CCDS DB by Protein ID:NP_808356Link to BLAST:NP_808356.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808356.1 129 Q8R1M2 129 100% 0 0

Chromosomal Locations for CCDS 20654.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 136808340 136808729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (390 nt):
ATGTCCGGGCGAGGCAAGCAGGGCGGTAAGGTGCGCGCCAAGGCCAAGTCGCGCTCGTCGCGCGCGGGCC
TGCAGTTCCCCGTGGGCCGCGTTCACCGGCTGCTGCGGAAGGGCAACTACGCGGAGCGCGTGGGCGCGGG
AGCGCCCGTGTACCTGGCGGCGGTGCTGGAGTACCTGACGGCCGAGATCCTGGAGCTGGCGGGCAACGCG
GCGAGGGACAACAAGAAGACGCGCATCATCCCTCGTCACCTGCAGCTGGCCATCCGCAACGACGAGGAGC
TCAACAAGCTGCTGGGCCGTGTGACCATCGCGCAGGGCGGCGTCCTGCCCAATATCCAGGCCGTGCTGCT
GCCCAAGAAGACGGAGAGCCAGAAGGTGAAGAGCAAGTGA

Translation (129 aa):
MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNA
ARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESQKVKSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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