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Report for CCDS20720.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20720.1 Public Mus musculus 7 Tfpt 23 108 98 CCDS HistoryNCBI Gene:69714Re-query CCDS DB by CCDS ID:20720.1Re-query CCDS DB by GeneID:69714See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20720.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000155592.7 ENSMUSP00000123636.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000155592.7Link to Ensembl Protein Viewer:ENSMUSP00000123636.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000155592Re-query CCDS DB by Protein ID:ENSMUSP00000123636
Original member NCBI NM_023524.2 NP_076013.1 Updated not alive Link to Nucleotide Sequence:NM_023524.2Link to Protein Sequence:NP_076013.1Re-query CCDS DB by Nucleotide ID:NM_023524Re-query CCDS DB by Protein ID:NP_076013
Current member NCBI NM_023524.3 NP_076013.1 Accepted alive Link to Nucleotide Sequence:NM_023524.3Link to Protein Sequence:NP_076013.1Re-query CCDS DB by Nucleotide ID:NM_023524Re-query CCDS DB by Protein ID:NP_076013Link to BLAST:NP_076013.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076013.1 249 Q3U1J1-2 249 100% 0 0

Chromosomal Locations for CCDS 20720.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 3620355 3620474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3620777 3620983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3621063 3621132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3624599 3624669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3628828 3629086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3629552 3629574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (750 nt):
ATGGAGTTGGAACAGAGAGAGGGGACCATGGCAGCCGTGGGCTTTGAAGAGTTCTCAGCGCCACCAGGCT
CAGAGCTGGCTCTGCCTCCCCTGTTTGGTGGCCACATCCTAGAAAGTGAGCTAGAGACAGAAGTGGAATT
TGTGTCCGGTGGTCTGGGTGATTCAGGACTCCGGGAGCGAGATGAAGAGGAAGAGGCAGCCCGGGGTCGA
AGGCGTCGCCAGCGGGAACTAAATCGTAGAAAGTACCAGGCACTAGGTCGGCGCTGCCGGGAGATCGAGC
AGGTGAATGAGCGAGTCTTGAACAGGCTCCATCAGGTGCAAAGGATAACTCGGAGACTCCAGCAGGAGCG
CAGGTTCCTCATGAGGGTGCTGGACTCCTACGGGGATGACTACCGAGATAGCCAGTTCACCATTGTGTTG
GAGGATGATGGCAGCCAAGGCACAGATGTCCCTACCCCAGGCAATGCTGAGAATGAACCTCCAGAGAAAG
AGGGGCTTTCCCCATCCCAAAGGACAACTGCAACCTTAGACCCCACCAGCCCAGCCCCTGGCGAGGGGCC
CAGTGGGCGGAAGAGGCGGCGGGCGCCACGGGTGGGGGCTTCATTGACTCCAGAACTGGCCCCAGTGCAG
ATTAAGGTTGAGGAAGACTTTGGCTTTGAAGCAGATGAGGCCTTGGATTCAAGTTGGGTTTCCCGAGAGC
CAGACAAATTGCTACCCTACCCTACCCTGGCCAGCCCACCCTTTGACTAA

Translation (249 aa):
MELEQREGTMAAVGFEEFSAPPGSELALPPLFGGHILESELETEVEFVSGGLGDSGLRERDEEEEAARGR
RRRQRELNRRKYQALGRRCREIEQVNERVLNRLHQVQRITRRLQQERRFLMRVLDSYGDDYRDSQFTIVL
EDDGSQGTDVPTPGNAENEPPEKEGLSPSQRTTATLDPTSPAPGEGPSGRKRRRAPRVGASLTPELAPVQ
IKVEEDFGFEADEALDSSWVSREPDKLLPYPTLASPPFD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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