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Report for CCDS20846.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20846.1 Public Mus musculus 7 C5ar1 23 108 98 CCDS HistoryNCBI Gene:12273Re-query CCDS DB by CCDS ID:20846.1Re-query CCDS DB by GeneID:12273See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20846.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050770.5 ENSMUSP00000060003.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050770.5Link to Ensembl Protein Viewer:ENSMUSP00000060003.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000050770Re-query CCDS DB by Protein ID:ENSMUSP00000060003
Original member Current member EBI ENSMUST00000168818.1 ENSMUSP00000129972.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168818.1Link to Ensembl Protein Viewer:ENSMUSP00000129972.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168818Re-query CCDS DB by Protein ID:ENSMUSP00000129972
Original member Current member NCBI NM_001173550.1 NP_001167021.1 Accepted alive Link to Nucleotide Sequence:NM_001173550.1Link to Protein Sequence:NP_001167021.1Re-query CCDS DB by Nucleotide ID:NM_001173550Re-query CCDS DB by Protein ID:NP_001167021Link to BLAST:NP_001167021.1
Original member Current member NCBI NM_007577.4 NP_031603.2 Accepted alive Link to Nucleotide Sequence:NM_007577.4Link to Protein Sequence:NP_031603.2Re-query CCDS DB by Nucleotide ID:NM_007577Re-query CCDS DB by Protein ID:NP_031603Link to BLAST:NP_031603.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001167021.1 351 P30993 351 100% 0 0
NP_031603.2 351 P30993 351 100% 0 0

Chromosomal Locations for CCDS 20846.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 16248038 16249090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16259145 16259147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGGACCCCATAGATAACAGCAGCTTTGAAATCAACTATGATCACTATGGAACCATGGATCCTAACATAC
CTGCGGATGGCATTCACCTCCCGAAGCGGCAACCTGGGGATGTTGCAGCCCTTATCATCTACTCGGTGGT
GTTCCTGGTGGGAGTACCTGGGAATGCCCTGGTGGTGTGGGTGACAGCCTTCGAGGCCAGACGGGCCGTC
AACGCCATCTGGTTTCTGAATCTGGCGGTGGCCGACCTCCTCTCGTGCTTGGCACTGCCTGTCCTGTTCA
CGACCGTTTTAAATCATAACTACTGGTACTTTGATGCCACCGCCTGTATAGTCCTGCCCTCGCTCATCCT
GCTCAACATGTACGCCAGTATCCTGCTGCTGGCTACCATTAGTGCCGACCGTTTCCTGCTGGTGTTCAAG
CCCATCTGGTGTCAGAAGGTCCGCGGGACTGGCCTGGCATGGATGGCCTGTGGAGTGGCCTGGGTCTTAG
CATTGCTCCTCACCATTCCATCCTTCGTGTACCGGGAGGCATATAAGGACTTCTACTCAGAGCACACTGT
ATGTGGTATTAACTATGGTGGGGGTAGCTTCCCCAAAGAGAAGGCTGTGGCCATCCTGCGGCTGATGGTG
GGTTTTGTGTTGCCTCTGCTCACTCTAAACATCTGCTACACCTTCCTCCTGCTCCGGACCTGGAGTCGCA
AGGCCACGCGCTCCACCAAGACGCTCAAAGTGGTGATGGCTGTGGTCATCTGTTTCTTTATCTTCTGGCT
GCCCTATCAGGTGACCGGGGTGATGATAGCGTGGCTGCCCCCGTCCTCGCCCACCTTGAAGAGGGTGGAG
AAGCTGAACTCCCTGTGCGTGTCCCTGGCCTACATCAACTGCTGTGTTAACCCTATCATCTACGTCATGG
CTGGCCAGGGTTTCCATGGACGACTCCTAAGGTCTCTCCCCAGCATCATACGAAACGCTCTCTCTGAGGA
TTCAGTGGGCAGGGATAGCAAGACTTTCACTCCGTCCACGACGGACACCTCAACCCGGAAGAGTCAGGCG
GTGTAG

Translation (351 aa):
MDPIDNSSFEINYDHYGTMDPNIPADGIHLPKRQPGDVAALIIYSVVFLVGVPGNALVVWVTAFEARRAV
NAIWFLNLAVADLLSCLALPVLFTTVLNHNYWYFDATACIVLPSLILLNMYASILLLATISADRFLLVFK
PIWCQKVRGTGLAWMACGVAWVLALLLTIPSFVYREAYKDFYSEHTVCGINYGGGSFPKEKAVAILRLMV
GFVLPLLTLNICYTFLLLRTWSRKATRSTKTLKVVMAVVICFFIFWLPYQVTGVMIAWLPPSSPTLKRVE
KLNSLCVSLAYINCCVNPIIYVMAGQGFHGRLLRSLPSIIRNALSEDSVGRDSKTFTPSTTDTSTRKSQA
V


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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