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Report for CCDS20920.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20920.1 Public Mus musculus 7 Nlrp9b 23 108 98 CCDS HistoryNCBI Gene:243874Re-query CCDS DB by CCDS ID:20920.1Re-query CCDS DB by GeneID:243874See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20920.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073151.12 ENSMUSP00000072895.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073151.12Link to Ensembl Protein Viewer:ENSMUSP00000072895.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000073151Re-query CCDS DB by Protein ID:ENSMUSP00000072895
Original member Current member NCBI NM_194058.2 NP_918947.2 Accepted alive Link to Nucleotide Sequence:NM_194058.2Link to Protein Sequence:NP_918947.2Re-query CCDS DB by Nucleotide ID:NM_194058Re-query CCDS DB by Protein ID:NP_918947Link to BLAST:NP_918947.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_918947.2 1003 Q66X22-1 1003 100% 0 0

Chromosomal Locations for CCDS 20920.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 20019172 20019442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 20023111 20024689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 20026516 20026680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 20028455 20028619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 20042351 20042518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 20045762 20045932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 20048682 20048852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 20049424 20049594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 20062589 20062739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3012 nt):
ATGGCGGGCTCATCTGGCTATGGCTTGCTGAAGCTTCTGCAAAAACTGAGTGATGAGGAGTTCCAGAGAT
TTAAAGAGCTTCTCAGAGAAGAGCCTGAAAAGTTTAAACTCAAACCAATATCCTGGACGAAAATCGAGAA
TTCTTCCAAAGAAAGCCTGGTAACGCTATTGAACACACATTATCCAGGACAGGCATGGAATATGATGTTA
AGCCTGTTTCTACAGGTCAATCGGGAAGACCTCTCAATCATGGCTCAGAAAAAGAAGAGACATAAACAAA
CTAAATACAAAAAGTTTATGAAGACTACATTTGAAAGGATATGGACATTGGAGACCAACACTCATATACC
TGATAGAAACTACCATTTAATTGTAGAAGTCCAGTACAAAGCATTGCAGGAAATATTTGATTCTGAGTCA
GAGCCAGTCACTGCAATTGTAGCAGGTACAACAGGAGAAGGAAAAACCACTTTCTTAAGAAAAGCAATGT
TGGATTGGGCATCAGGAGTTTTACTGCAGAACCGGTTTCAGTATGTTTTCTTCTTCTCTGTCTTCTCACT
TAACAATACCACAGAGTTAAGCTTAGCCGAGCTTATCTCAAGTACGTTGCCTGAATCTTCAGAGACAGTG
GATGATATTTTATCTGATCCAAAAAGAATCTTGTTTATCCTGGATGGATTTGATTACCTGAAATTTGACT
TGGAACTCAGGACAAACTTGTGCAATGACTGGAGGAAGAGGCTGCCAACACAAATCGTCTTGAGTAGTTT
GCTACAGAAAATAATGCTCCCGGGATGTTCTCTGCTTCTTGAATTGGGACAAATAAGTGTACCAAAAATC
CGTCATTTGCTGAAGTATCCAAGGGTGATAACTATGCAAGGATTCTCTGAGCGGTCTGTAGAGTTCTATT
GTATGTCCTTCTTTGATAACCAGAGAGGCATAGAAGTAGCTGAGAATTTAAGGAATAATGAAGTACTCCA
TTTATGCAGCAATCCTTATCTATGCTGGATGTTCTGTAGTTGTTTAAAGTGGCAGTTTGACAGGGAGGAG
GAAGGGTACTTTAAGGCTAAAACAGATGCGGCTTTCTTCACAAACTTTATGGTGAGTGCATTCAAATCAA
CATATGCCCATAGTCCGTCCAAACAGAACAGAGCCCGATTAAAGACCCTGTGTACCTTGGCTGTAGAAGG
AATGTGGAAAGAGTTGTTTGTCTTTGACTCTGAAGATCTCAGGAGGAATGGGATATCTGAATCCGATAAG
GCAGTGTGGCTGAAAATGCAATTTCTCCAGACTCACGGTAACCACACTGTGTTTTATCATCCTACACTAC
AGTCATATTTTGCTGCCATGTTCTATTTCCTCAAACAAGACAAAGACATATGTGTCCCAGTCATTGGAAG
CATACCTCAACTTCTAGGAAACATGTATGCTCGTGGCCAGACCCAGTGGCTCCAGTTAGGCACATTTTTG
TTTGGACTCATCAATGAACAAGTCGCCGCCTTACTCCAACCATGCTTTGGCTTTATACAACCCATATATG
TAAGACAGGAAATCATTTGTTACTTTAAGTGTCTTGGTCAACAAGAGTGCAATGAGAAACTGGAAAGATC
CCAGACTTTGTTCTCCTGTCTGCGTGACAGCCAGGAGGAAAGATTTGTTAGACAAGTGGTGGATCTACTT
GAAGAAATTACTGTTGATATTAGTAGTTCAGATGTATTATCAGTGACTGCATATGCTCTGCAGAAATCCT
CCAAATTAAAGAAACTTCATCTGCATATACAAAAGACAGTTTTTTCAGAAATCTACTGCCCAGACCATTG
TAAAACAAGAACTTCTATAGGCAAAAGACGAAATACAGCCGAATATTGGAAAACATTATGTGGCATTTTC
TGCAACTTATATGTGTTGGATCTGGACAGCTGTCAGTTCAATAAAAGGGCCATACAGGACCTCTGTAATT
CGATGTCTCCAACTCCTACGGTGCCCCTGACTGCTTTTAAGCTCCAAAGCTTGTCGTGTTCCTTCATGGC
TGACTTTGGAGATGGTTCATTATTTCACACCCTTCTTCAGCTACCTCACCTGAAATACCTGAACCTGTAT
GGCACTTATCTCTCCATGGATGTGACTGAGAAGCTGTGTGCTGCTCTGAGATGCTCAGCATGCAGAGTGG
AGGAGCTGCTGTTGGGTAAATGTGGCATCTCAAGTAAGGCCTGTGGCATAATTGCGATTTCCCTTATCAA
CTCTAAAGTGAAACACCTCTCATTGGTTGAAAATCCCTTGAAGAACAAAGGAGTGATGTCACTGTGTGAA
ATGCTGAAGGATCCAAGCTGTGTCCTGCAGTCACTGATGTTGTCTTACTGCTGCCTCACATTCATTGCCT
GTGGACATCTCTATGAAGCACTTTTGAGCAACAAACACCTCTCCCTGCTTGATCTGGGATCAAATTTCCT
GGAAGATACTGGAGTGAACCTTCTGTGTGAAGCTTTGAAAGATCCAAACTGCACCCTCAAGGAGTTATGG
TTGCCGGGTTGCTTTTTAACTTCACAATGCTGTGAGGAGATCTCGGCTGTCCTCATTTGCAATAGAAATC
TAAAGACCCTGAAACTGGGCAACAATAACATACAAGACACTGGTGTCAGACAGTTATGTGAAGCTCTGAG
TCATCCCAACTGTAACTTGGAGTGTCTTGGGTTAGACCTGTGTGAGTTCACCAGTGACTGTTGTAAGGAC
CTAGCCTTGGCTCTCACCACCTGCAAAACACTGAATAGCTTAAATCTGGACTGGAAAACCTTGGACCACT
CTGGGCTGGTGGTGCTCTGTGAGGCTTTGAATCACAAAAGATGTAACCTGAAGATGCTTGGACTGGACAA
ATCTGCGTTTTCCGAGGAATCACAGACATTACTGCAAGATGTGGAAAAGAAAAATAATAATCTGAATATT
TTGCATCATCCCTGGTTTGAGGCGGAACGCAACAAGAGGGGTACTCGTCTGGTATGGAACAGCAGGAATT
GA

Translation (1003 aa):
MAGSSGYGLLKLLQKLSDEEFQRFKELLREEPEKFKLKPISWTKIENSSKESLVTLLNTHYPGQAWNMML
SLFLQVNREDLSIMAQKKKRHKQTKYKKFMKTTFERIWTLETNTHIPDRNYHLIVEVQYKALQEIFDSES
EPVTAIVAGTTGEGKTTFLRKAMLDWASGVLLQNRFQYVFFFSVFSLNNTTELSLAELISSTLPESSETV
DDILSDPKRILFILDGFDYLKFDLELRTNLCNDWRKRLPTQIVLSSLLQKIMLPGCSLLLELGQISVPKI
RHLLKYPRVITMQGFSERSVEFYCMSFFDNQRGIEVAENLRNNEVLHLCSNPYLCWMFCSCLKWQFDREE
EGYFKAKTDAAFFTNFMVSAFKSTYAHSPSKQNRARLKTLCTLAVEGMWKELFVFDSEDLRRNGISESDK
AVWLKMQFLQTHGNHTVFYHPTLQSYFAAMFYFLKQDKDICVPVIGSIPQLLGNMYARGQTQWLQLGTFL
FGLINEQVAALLQPCFGFIQPIYVRQEIICYFKCLGQQECNEKLERSQTLFSCLRDSQEERFVRQVVDLL
EEITVDISSSDVLSVTAYALQKSSKLKKLHLHIQKTVFSEIYCPDHCKTRTSIGKRRNTAEYWKTLCGIF
CNLYVLDLDSCQFNKRAIQDLCNSMSPTPTVPLTAFKLQSLSCSFMADFGDGSLFHTLLQLPHLKYLNLY
GTYLSMDVTEKLCAALRCSACRVEELLLGKCGISSKACGIIAISLINSKVKHLSLVENPLKNKGVMSLCE
MLKDPSCVLQSLMLSYCCLTFIACGHLYEALLSNKHLSLLDLGSNFLEDTGVNLLCEALKDPNCTLKELW
LPGCFLTSQCCEEISAVLICNRNLKTLKLGNNNIQDTGVRQLCEALSHPNCNLECLGLDLCEFTSDCCKD
LALALTTCKTLNSLNLDWKTLDHSGLVVLCEALNHKRCNLKMLGLDKSAFSEESQTLLQDVEKKNNNLNI
LHHPWFEAERNKRGTRLVWNSRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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