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Report for CCDS20936.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20936.1 Public Mus musculus 7 Vmn1r179 23 108 98 CCDS HistoryNCBI Gene:404286Re-query CCDS DB by CCDS ID:20936.1Re-query CCDS DB by GeneID:404286See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20936.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049819.3 ENSMUSP00000055372.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049819.3Link to Ensembl Protein Viewer:ENSMUSP00000055372.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000049819Re-query CCDS DB by Protein ID:ENSMUSP00000055372
Original member Current member EBI ENSMUST00000236851.1 ENSMUSP00000157551.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236851.1Link to Ensembl Protein Viewer:ENSMUSP00000157551.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236851Re-query CCDS DB by Protein ID:ENSMUSP00000157551
Original member Current member NCBI NM_207545.1 NP_997428.1 Accepted alive Link to Nucleotide Sequence:NM_207545.1Link to Protein Sequence:NP_997428.1Re-query CCDS DB by Nucleotide ID:NM_207545Re-query CCDS DB by Protein ID:NP_997428Link to BLAST:NP_997428.1

Chromosomal Locations for CCDS 20936.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 23928386 23929357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGTCCTATCTAATCATCACTCCAGTGTCTGCGAAAGCCCTCTCTATGTGTACGCTTGATAAGTCGCTGA
AAACCACTGAGGAAGTAGCTCTTCAGATCTTCTTGCTTTGCCAGTTTGGTGTTGGAACTGTGGCCAATGT
CTTTCTGTTTGTCCATAATTTCTATCCAGTCTTGACTGGTTCTCAACAGAGTCCCAGACAGGTGATTTTA
AGCCACATGGCTGTGGCCAATATCTTGATTCTCTTCATCACTATATTTCCAACCAATGTGATGACTTTTG
CTCCAAGAAATCCTCCAACTGACCTCAAATGTAAATTAGAATTCTTCATTCGCCTAGTGGCAAGAAGCAC
AAACTTGTGTTCCACCTGTGTCCTGAGTATTTATCAGTTTGTCACTCTTGTTCCTGTTAATAGAGGTAAA
CTCATACTCAGAGCAAGTGTCCCAAGTTTGGCAAGGTATTCTTGTTACAGTTGTTGGTTCTTCAGTGTCT
TAAACAACATCTACATTCCAATTAAGGTCACTGGTCCACAGATAGCAGACAATAACACTGACTGTAGAAG
CAAGTTGTTCTGCTTCACTTTTGGATACAGTAGAGTCATTTTCTTCTTGAGGATTGCCTATGATGCCACA
TTCATGAGCATCATGGTCTGGACCAGTGTCTCCATGGTACTTCTCCTCCATAGACATCACCATAAAATGC
AGCATATCTTTACTACCAATCGACACTACAGAGGCCAAGCTGAGACTAGAGCAACCAGTACTATCCTGAT
GCTGGTGGTCACATTTGTTAGCTTTTATCTTCTAAATTTTACTTGCATCATCATTCAAGCCCTTGTTACA
GATTCTCATGCATTTGTGAGGCATTGGAGTGAAGCTTTGGTCACAGGCTTTCCCACTATCTCTCCCTTAC
TGTTGATCTTCAGAAAATCTAAGGATCCTTGTTCTGTGTTCTTCCGATTGTTGAAATCCTGA

Translation (323 aa):
MSYLIITPVSAKALSMCTLDKSLKTTEEVALQIFLLCQFGVGTVANVFLFVHNFYPVLTGSQQSPRQVIL
SHMAVANILILFITIFPTNVMTFAPRNPPTDLKCKLEFFIRLVARSTNLCSTCVLSIYQFVTLVPVNRGK
LILRASVPSLARYSCYSCWFFSVLNNIYIPIKVTGPQIADNNTDCRSKLFCFTFGYSRVIFFLRIAYDAT
FMSIMVWTSVSMVLLLHRHHHKMQHIFTTNRHYRGQAETRATSTILMLVVTFVSFYLLNFTCIIIQALVT
DSHAFVRHWSEALVTGFPTISPLLLIFRKSKDPCSVFFRLLKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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