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Report for CCDS20944.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20944.2 Public Mus musculus 7 Zfp111 23 108 98 CCDS HistoryNCBI Gene:56707Re-query CCDS DB by CCDS ID:20944.2Re-query CCDS DB by GeneID:56707See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 20944.1
The coding region has been updated to change the N-terminus to one that is more supported by available conservation data and transcript data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 20944.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086006.11 ENSMUSP00000083169.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086006.11Link to Ensembl Protein Viewer:ENSMUSP00000083169.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000086006Re-query CCDS DB by Protein ID:ENSMUSP00000083169
Original member Current member EBI ENSMUST00000073833.13 ENSMUSP00000083174.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073833.13Link to Ensembl Protein Viewer:ENSMUSP00000083174.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000073833Re-query CCDS DB by Protein ID:ENSMUSP00000083174
Original member Current member NCBI NM_019940.2 NP_064324.2 Accepted alive Link to Nucleotide Sequence:NM_019940.2Link to Protein Sequence:NP_064324.2Re-query CCDS DB by Nucleotide ID:NM_019940Re-query CCDS DB by Protein ID:NP_064324Link to BLAST:NP_064324.2

Chromosomal Locations for CCDS 20944.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 24198082 24200042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24203370 24203496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24207058 24207072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2103 nt):
ATGACCAAGTTACAGGAGGCAGTGACATTCAGGGACGTGGCCGTGGTCTTCAGCGAGGAGGAGCTGGGGC
TGCTGGACGCTGCTCAGAGGAAGCTGTACCACGATGTGATGCTGGAGAACTTCAGGAACCTCCTGGCAGT
GGGAGGCCAGAGTCCAAATAAGATGGAGATTGTTGACGCAACAGGATTAAGGTGCCTTTCACTGGGGCAG
CTTCTCTGCTGGGGAGAAACAAGCCATAATATCAACAAACTAGCCAGAGCTCTAGAAGCTGTAATCAACA
CTCAGGGAAAGTGTTCTCACTCATTGGAGCAGTGCCACTCCTCCTGCCACAGGGTATCAGAAGAGCCTCC
CCGGGATTCTGAGGATAGCAGTTCTCCTGATCTGACAAATGACCATTCCAGCATTACTGAAAATCAGGAA
TTTCTGTCTGGGAGAGCCCAGGGTTCTTGGGGTAAAAGACGTCTTAGGAAAAGACAGAACCATCAGAAAA
ACTGTCTGCAGACTCTGATGAAAAACAAGCCACAGCTGCTGGCTCAGCATTCTCCTGTACATAGTACGCA
GGAGGACACCAGGCATAGCTTCAGTGTGCCAGTTCAAGAAAGCATTTATCCAGGAAGAAAGCGCTACAGG
TGTCAAGAGTGTGGCAAGGCTTTCCGTCAGAGCTCAGCACTTCAGACTCACCAGAGAGTGCACACAGGGG
AGAAGCCCTACAGGGGCAACAGCCGTGGGAAAAACTTCAGTCGTAGCTCGGATCTCAACATCCACCGCCA
AGTGCACACTAGAGAGAAACCTTACACATGTAAAGTGTGTAAGAAGCGCTTCATGCAGTGTTCGCTTCTC
CAGGCTCACAAGAGGATTCACACAGGAGAGAAGCCATATAAGTGTGGCGACTGTGGCAAGCGCTTCAGCT
GTATCTCGAACTTTCACATCCACCAGAGAGTCCACACTAAGAGCAAACCGTCCAAGTGTGATTATGGGAA
GCCCTTCAACTTGAGATGCAACTTCCACAGCCATCAGCGGGTCCACACAGGAGAGAAGCCATATAAATGT
GAAGAGTGTGGGAAGGGTTTCACTTCAGCCTCAAGCTTCCAAAGACACCAGCGGGTCCATACAGGAGAGA
AGCCATTTGTCTGCAGTGTGTGTGGGAAGGGCTTCAGTCGGACTTCATACCTTCAGACTCATCAGAGAGT
GCACTCAGGGGACAAGCCTTATCAGTGCGACAGCTGTGGGAAGGGCTTCACTCAGTTGTCACACCTCCAG
GCCCACGAGAGAATTCACACAGATCAGAAGCCATATAAGTGTGGAGACTGTGGCAAACGCTTCAGCTGCA
GCTCAAACCTTCACACCCACCAGAGAGTCCACACAGGAGAGAAACCCTATAAATGTGAGGAGTGTGGGAA
AGGCTTCAGCCTTGTCTCTGGGCTACAGGCTCATCAAAGAGTCGAAACTGGCAAGAAGCCATTCAAATGC
AATGCATGCCAGAAGCGATTTAGTCAGGCCTGGAACCTCCATGCCCACCAGAGGGTGCACACTGGGGAGA
AGCCCTACAAATGTGACACGTGTGGGAAAGCCTTTGGCCAGAGGTCTGGTCTCCAAATCCATCAGAGAAT
TCATACTGGGGAGAAGCCTTTCAAGTGTGAGGAGTGTGGGAAGGAATTCAGCTTGAATTCCGGGCTTATT
GCTCACCGGAGAGTCCACACGGGAGAGAAACCCTATGAGTGCAAGGACTGTGGGAAAGGCTTCAGTCTTG
CCTCAAGTCTACGGACTCATCAGAGAGTTCACACTGGTGAGAAGCCCTTCCAATGCAATGAGTGCCAGAA
GCGGTTCAGTCAGGTCTCACACCTCCAGTCCCACCAGAGAGTGCACACTGGGGAGAAGCCCTACAAATGT
GACCGGTGTGGGAAAGCTTTCAGCCAGAAGTCTGGGCTCCAAGTCCATAAGAGAATTCACACTGGGGAGA
AGCCGTTCAAGTGTGAGGAGTGTGGGAAGGAATTCATCTGGAGCTCAGGGCTTAGTGCTCACCGGAAGGT
TCATACAGGAGAGAAACCCTACAGACGTCGGCAGTATGGGAAGGGCCTCATCAGGCCTCACACTTCCGAT
TAA

Translation (700 aa):
MTKLQEAVTFRDVAVVFSEEELGLLDAAQRKLYHDVMLENFRNLLAVGGQSPNKMEIVDATGLRCLSLGQ
LLCWGETSHNINKLARALEAVINTQGKCSHSLEQCHSSCHRVSEEPPRDSEDSSSPDLTNDHSSITENQE
FLSGRAQGSWGKRRLRKRQNHQKNCLQTLMKNKPQLLAQHSPVHSTQEDTRHSFSVPVQESIYPGRKRYR
CQECGKAFRQSSALQTHQRVHTGEKPYRGNSRGKNFSRSSDLNIHRQVHTREKPYTCKVCKKRFMQCSLL
QAHKRIHTGEKPYKCGDCGKRFSCISNFHIHQRVHTKSKPSKCDYGKPFNLRCNFHSHQRVHTGEKPYKC
EECGKGFTSASSFQRHQRVHTGEKPFVCSVCGKGFSRTSYLQTHQRVHSGDKPYQCDSCGKGFTQLSHLQ
AHERIHTDQKPYKCGDCGKRFSCSSNLHTHQRVHTGEKPYKCEECGKGFSLVSGLQAHQRVETGKKPFKC
NACQKRFSQAWNLHAHQRVHTGEKPYKCDTCGKAFGQRSGLQIHQRIHTGEKPFKCEECGKEFSLNSGLI
AHRRVHTGEKPYECKDCGKGFSLASSLRTHQRVHTGEKPFQCNECQKRFSQVSHLQSHQRVHTGEKPYKC
DRCGKAFSQKSGLQVHKRIHTGEKPFKCEECGKEFIWSSGLSAHRKVHTGEKPYRRRQYGKGLIRPHTSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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