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Report for CCDS21351.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21351.1 Public Mus musculus 7 Lrrc28 23 108 98 CCDS HistoryNCBI Gene:67867Re-query CCDS DB by CCDS ID:21351.1Re-query CCDS DB by GeneID:67867See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21351.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053950.9 ENSMUSP00000052177.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053950.9Link to Ensembl Protein Viewer:ENSMUSP00000052177.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000053950Re-query CCDS DB by Protein ID:ENSMUSP00000052177
Original member Current member NCBI NM_175124.5 NP_780333.3 Accepted alive Link to Nucleotide Sequence:NM_175124.5Link to Protein Sequence:NP_780333.3Re-query CCDS DB by Nucleotide ID:NM_175124Re-query CCDS DB by Protein ID:NP_780333Link to BLAST:NP_780333.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780333.3 367 Q3TX51 367 100% 0 0

Chromosomal Locations for CCDS 21351.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 67515106 67515178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67529586 67529745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67531615 67531790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67545366 67545468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67559858 67560064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67617993 67618130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67619074 67619111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67628295 67628335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67641104 67641271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGGCATCCGAAATCTGTAAGACGATCTCTGTGGCCAGGCTTGAAAAGCACAAGAATTTGTTCTTAAATT
ACAGGAATCTGCACCATTTTCCACTGGAGTTGCTGAAGGATGAGGGGCTGCAGCACCTGGAGAGGCTCTA
TATGAAAAGGAACTCCCTCACAACCTTGCCAGAAAACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACTG
TACCTTCACTCAAATAACATAGTTGTGGTTCCAGAAGCCATCGGGTCCCTCGTGAAACTCCAGTGTCTGG
ATCTCAGTGACAATGCCTTAGAGATCGTTTGCCCAGAAATCGGTGGTCTGAGAGCGTTGCGTCATCTTCG
ATTAGCTAATAACCAGCTACAGTTCCTACCTCCAGAGGTTGGCGATTTGAAGGAGCTGCAGACACTAGAC
ATTTCTAGCAATCGCTTGCTAGCTTTACCCGAGAGGCTTCACCTGTGCCTTTCTCTGCAGTACCTCACTG
TGGACCGCAATCGGCTATGCTGTGTGCCGCGCCATCTCTGCCAGCTGCCCAGCCTCAATGAGCTCTCCAT
GGCTGGAAACCATCTTGCATCTTTGCCCATTGATTTAGGTCGCTCCCGAGAACTGCAGTACGTGTATGTG
GATAACAACATCCAGCTGAAGGGCCTGCCCTCATACCTCTACAACAAAGTCATCGGCTGCAACGGCTGTG
GCATCCCCATCCAATTGTCAGAGGTGAGGCTGCTGACATTTTCATCTGGGCAGCTGACAGTCTTCCTCCC
AGCAGAGGTGAAGACAATAGGCACAGAGAAGGATCATGTCCTGCCTCTGCAAGAACTGACCATGCGGAGT
CTCTACCGCACCTACCACGGGCTTTGGAAAGATCTGAACTTTTTGTCTCCAATCTCATTACCCAGAAGTC
TCCTGGAGCTGCTGCACTGCCCCCTGGGGCACTGTCACCTGTGTAGTGAGCCCATGTTTACCTTCGTCTA
TCCTAAGATCTTCCCCTTGAGAGAGACGCCGATGGCAGGCCTGCACCAGAGGAGGACAAGTATTGGCTTC
GTGGCTTACTGCTGCTCCACCCAGTGTCTGCGGACTTTTAACCTGCTGTGTTGA

Translation (367 aa):
MASEICKTISVARLEKHKNLFLNYRNLHHFPLELLKDEGLQHLERLYMKRNSLTTLPENLAQKLPNLVEL
YLHSNNIVVVPEAIGSLVKLQCLDLSDNALEIVCPEIGGLRALRHLRLANNQLQFLPPEVGDLKELQTLD
ISSNRLLALPERLHLCLSLQYLTVDRNRLCCVPRHLCQLPSLNELSMAGNHLASLPIDLGRSRELQYVYV
DNNIQLKGLPSYLYNKVIGCNGCGIPIQLSEVRLLTFSSGQLTVFLPAEVKTIGTEKDHVLPLQELTMRS
LYRTYHGLWKDLNFLSPISLPRSLLELLHCPLGHCHLCSEPMFTFVYPKIFPLRETPMAGLHQRRTSIGF
VAYCCSTQCLRTFNLLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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