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Report for CCDS21412.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21412.1 Public Mus musculus 7 Il16 23 108 98 CCDS HistoryNCBI Gene:16170Re-query CCDS DB by CCDS ID:21412.1Re-query CCDS DB by GeneID:16170See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21412.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001792.11 ENSMUSP00000001792.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001792.11Link to Ensembl Protein Viewer:ENSMUSP00000001792.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000001792Re-query CCDS DB by Protein ID:ENSMUSP00000001792
Original member Current member NCBI NM_010551.4 NP_034681.2 Accepted alive Link to Nucleotide Sequence:NM_010551.4Link to Protein Sequence:NP_034681.2Re-query CCDS DB by Nucleotide ID:NM_010551Re-query CCDS DB by Protein ID:NP_034681Link to BLAST:NP_034681.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034681.2 1322 O54824-1 1322 100% 0 0

Chromosomal Locations for CCDS 21412.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 83643889 83644076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83645828 83645950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83646302 83646560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83648715 83648816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83650881 83651049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83651879 83652962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83655279 83655423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83660798 83661285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83663064 83663151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83666876 83667008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83670092 83670209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83673034 83673250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83674486 83674559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83677987 83678101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83680625 83680735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83682816 83682949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83688085 83688193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83722285 83722596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3969 nt):
ATGGAACCCCACGGCCACTCCGGAAAGAGCCGGAAATCCACGAAATTTCGCTCCATCTCCCGTTCCCTGA
TCCTCTGTAACGCCAAGACCAGTGATGACGGCTCCAGCCCAGATGAGAAGTACCCTGACCCTTTTGAGAC
TTCACTGTGCCAGGGCAAGGAGGGTTTCTTTCACTCCTCCATGCAGCTGGCAGACACATTTGAGGCTGGG
CTCAGCAATATCCCAGACCTCGCACTGGCCTCGGACTCTGCTCAACTCGCAGCAGCTGGGAGCGATCGAG
GCAAGCACTGCAGGAAGATGTTCTTCATGAAGGAATCTTCTTCAACTTCCTCTAAAGAAAAGTCTGGAAA
ACCAGAAGCACAAAGTAGCAGCTTCCTGTTTCCTAAAGCTTGCCACCAAAGGACACGCAGCAACTCCACC
AGTGTTAACCCCTACAGTGCTGGAGAAATCGATTTTCCAATGACCAAGAAATCTGCAGCTCCCACCGACC
GGCAGCCCTACTCCCTCTGTAGCAACAGGAAGTCCCTCTCTCAACAACTGGACTACCCAATTTTGGGCAC
TGCAAGACCAACTCGGTCACTGAGCACAGCTCAGCTCGGGCAGCTGTCTGGGGGTCTGCAGGCGTCAGTC
ATCTCCAACATAGTGCTGATGAAGGGCCAAGCAAAGGGCCTGGGCTTCAGCATTGTTGGAGGAAAGGACA
GCATTTACGGCCCTATTGGAATTTATGTGAAGAGCATCTTTGCAGGGGGAGCAGCTGCAGCTGATGGACG
GCTTCAGGAAGGTGATGAAATTCTGGAACTCAATGGTGAATCAATGGCTGGCCTAACACACCAGGATGCT
TTGCAGAAGTTTAAGCAAGCCAAGAAGGGGCTGCTGACTCTGACAGTGAGGACTCGCCTGACAACACCCC
CTTCACTATGCAGCCACCTGTCACCTCCTCTGTGCCGTTCCCTGAGCTCCAGCACATGTGGTGCCCAGGA
CAGCAGCCCCTTCTCCTTGGAAAGTCCAGCGTCTCCTGCTAGCACTGCCAAACCCAACTACAGAATCATG
GTGGAGGTGTCTCTGAAGAAAGAGGCAGGTGTTGGCCTGGGGATCGGCCTGTGCAGCATCCCCTACTTCC
AGTGCATCTCAGGCATCTTCGTTCACACACTGTCACCAGGATCCGTGGCACATCTTGATGGACGGCTGAG
GTGTGGTGATGAGATTGTGGAAATCAATGATTCTCCAGTGCACTGCCTGACTCTCAATGAAGTCTACACA
ATCCTGAGCCACTGTGACCCTGGCCCAGTTCCCATCATCGTAAGCCGACATCCGGACCCACAGGTTTCTG
AACAGCAACTCAAGGAAGCTGTGGCTCAGGCTGTGGAAGGCGTCAAGTTTGGGAAGGACAGGCACCAGTG
GAGCTTGGAAGGTGTCAAAAGGCTGGAGAGCAGCTGGCATGGGCGGCCTACCTTGGAGAAAGAACGTGAG
AAGCACTCAGCGCCCCCACATCGAAGGGCCCAGAAGATCATGGTCCGATCCAGCAGTGACAGCAGCTACA
TGTCTGGGTCACCAGGGGGAAGTCCCTGCAGTGCAGGTGCGGAGCCACAGCCTTCTGAGAGGGAAGGCAG
CACACACAGTCCCAGCCTGTCCCCAGGGGAGGAGCAAGAGCCGTGCCCAGGGGTCCCATCCAGGCCTCAG
CAGGAGAGCCCACCCCTTCCTGAGAGCTTGGAAAGAGAGAGCCACCCACCACTGAGACTGAAGAAATCTT
TTGAGATTTTGGTGAGAAAGCCGACATCCTCCAAACCCAAGCCTCCACCCAGAAAATACTTTAAAAATGA
CAGCGAGCCTCAGAAGAAACTGGAGGAGAAAGAGAAGGTCACAGACCCTTCTGGGCACACCTTGCCCACC
TGCAGCCAGGAAACCAGAGAGCTGCTGCCACTGTTGCTACAGGAAGACACTGCAGGGAGAGCCCCCTGCA
CCGCTGCCTGCTGCCCAGGACCTGCAGCCAGCACGCAGACTTCATCCTCCACAGAAGGAGAGTCAAGGAG
GAGTGCCAGCCCAGAGACTCCAGCATCCCCAGGAAAACACCCGCTGCTGAAGAGGCAGGCACGGATGGAC
TATAGCTTTGATATCACTGCTGAAGACCCTTGGGTTAGAATTTCCGACTGCATCAAAAACTTATTTAGCC
CCATCATGAGTGAGAACCATAGCCATACACCACTACAGCCCAACACCAGCCTTGGTGAAGAGGATGGGAC
ACAGGGCTGTCCAGAGGGGGGCCTGTCAAAAATGGACGCTGCCAATGGTGCTCCCAGAGTTTACAAGTCA
GCAGATGGCAGCACTGTGAAGAAGGGGCCTCCAGTAGCCCCAAAGCCAGCTTGGTTTCGGCAGAGCTTGA
AAGGTCTGAGGAATCGTGCCCCAGACCCCAGAAGACCCCCGGAAGTAGCCTCAGCCATTCAGCCTACACC
AGTTTCTAGGGACCCACCAGGGCCACAGCCTCAGGCCTCTTCCTCCATCAGGCAGAGAATCAGCTCCTTT
GAAAACTTTGGCTCCTCACAATTGCCAGACAGAGGAGTCCAGAGACTGAGCCTGCAGCCCAGCTCTGGGG
AGACCACCAAATTTCCAGGAAAGCAAGATGGAGGACGATTTTCTGGTCTCCTGGGTCAAGGGGCTACAGT
AACAGCTAAGCACAGACAGACAGAGGTAGAGTCTATGTCCACAACCTTCCCTAACTCCTCAGAGGTCAGG
GACCCAGGTTTGCCTGAGTCTCCTCCCCCAGGTCAGCGACCCAGCACAAAAGCTTTGTCTCCAGACCCTC
TCTTGAGACTGTTGACTACACAATCCGAGGATACTCAAGGACCAGGTCTCAAGATGCCAAGTCAGCGGGC
ACGGAGCTTCCCCCTGACCAGGACCCAGTCCTGCGAGACAAAGCTGTTGGATGAAAAGGCCAGTAAGCTT
TACTCCATCAGCAGCCAGCTATCATCTGCTGTCATGAAATCCCTGCTGTGCCTTCCATCTTCAGTCTCTT
GTGGCCAGATCACCTGCATCCCCAAGGAGAGGGTGTCTCCAAAGTCACCTTGCAACAACAGCTCAGCTGC
AGAGGGTTTTGGTGAAGCCATGGCCTCTGACACAGGGTTCTCTCTCAACCTTTCAGAGCTGAGAGAATAT
TCAGAAGGTCTCACAGAGCCCGGGGAAACCGAGGACAGGAACCACTGTTCTTCTCAGGCCGGCCAGTCGG
TTATCTCCTTGCTGAGTGCAGAAGAACTGGAAAAACTCATTGAGGAAGTGAGAGTTCTAGATGAAGCAAC
ATTGAAGCAATTAGACAGCATTCATGTCACCATCTTACACAAGGAAGAAGGTGCTGGTCTTGGATTCAGC
TTGGCAGGAGGGGCAGATCTAGAAAACAAGGTGATCACGGTTCACAGAGTGTTTCCAAATGGGCTGGCTT
CCCAGGAAGGCACAATTCAGAAAGGCAACGAGGTTCTTTCCATCAATGGCAAATCTCTCAAGGGCGCTAC
CCACAATGATGCCCTAGCTATCCTTCGCCAAGCTCGGGACCCAAGGCAAGCTGTGATTGTCACCAGGAGG
ACAACTGTGGAGGCCACTCATGACCTGAACTCCTCTACTGACTCCGCAGCCTCAGCTTCAGCAGCCAGTG
ACATTTCTGTAGAATCTAAGGAGGCCACTGTCTGCACAGTGACACTGGAGAAGACCTCTGCAGGGCTGGG
CTTCAGCCTGGAGGGAGGAAAGGGCTCCCTGCATGGTGACAAGCCTCTTACCATAAACAGGATTTTCAAA
GGGACAGAACAGGGTGAGATGGTGCAGCCAGGGGATGAGATCTTGCAGCTCGCTGGCACTGCTGTGCAAG
GTCTTACCCGGTTTGAAGCCTGGAATGTCATCAAGGCATTGCCTGATGGACCTGTCACTATAGTCATCAG
AAGGACCAGCCTCCAGTGCAAGCAGACAACAGCTTCTGCAGACTCATAG

Translation (1322 aa):
MEPHGHSGKSRKSTKFRSISRSLILCNAKTSDDGSSPDEKYPDPFETSLCQGKEGFFHSSMQLADTFEAG
LSNIPDLALASDSAQLAAAGSDRGKHCRKMFFMKESSSTSSKEKSGKPEAQSSSFLFPKACHQRTRSNST
SVNPYSAGEIDFPMTKKSAAPTDRQPYSLCSNRKSLSQQLDYPILGTARPTRSLSTAQLGQLSGGLQASV
ISNIVLMKGQAKGLGFSIVGGKDSIYGPIGIYVKSIFAGGAAAADGRLQEGDEILELNGESMAGLTHQDA
LQKFKQAKKGLLTLTVRTRLTTPPSLCSHLSPPLCRSLSSSTCGAQDSSPFSLESPASPASTAKPNYRIM
VEVSLKKEAGVGLGIGLCSIPYFQCISGIFVHTLSPGSVAHLDGRLRCGDEIVEINDSPVHCLTLNEVYT
ILSHCDPGPVPIIVSRHPDPQVSEQQLKEAVAQAVEGVKFGKDRHQWSLEGVKRLESSWHGRPTLEKERE
KHSAPPHRRAQKIMVRSSSDSSYMSGSPGGSPCSAGAEPQPSEREGSTHSPSLSPGEEQEPCPGVPSRPQ
QESPPLPESLERESHPPLRLKKSFEILVRKPTSSKPKPPPRKYFKNDSEPQKKLEEKEKVTDPSGHTLPT
CSQETRELLPLLLQEDTAGRAPCTAACCPGPAASTQTSSSTEGESRRSASPETPASPGKHPLLKRQARMD
YSFDITAEDPWVRISDCIKNLFSPIMSENHSHTPLQPNTSLGEEDGTQGCPEGGLSKMDAANGAPRVYKS
ADGSTVKKGPPVAPKPAWFRQSLKGLRNRAPDPRRPPEVASAIQPTPVSRDPPGPQPQASSSIRQRISSF
ENFGSSQLPDRGVQRLSLQPSSGETTKFPGKQDGGRFSGLLGQGATVTAKHRQTEVESMSTTFPNSSEVR
DPGLPESPPPGQRPSTKALSPDPLLRLLTTQSEDTQGPGLKMPSQRARSFPLTRTQSCETKLLDEKASKL
YSISSQLSSAVMKSLLCLPSSVSCGQITCIPKERVSPKSPCNNSSAAEGFGEAMASDTGFSLNLSELREY
SEGLTEPGETEDRNHCSSQAGQSVISLLSAEELEKLIEEVRVLDEATLKQLDSIHVTILHKEEGAGLGFS
LAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGATHNDALAILRQARDPRQAVIVTRR
TTVEATHDLNSSTDSAASASAASDISVESKEATVCTVTLEKTSAGLGFSLEGGKGSLHGDKPLTINRIFK
GTEQGEMVQPGDEILQLAGTAVQGLTRFEAWNVIKALPDGPVTIVIRRTSLQCKQTTASADS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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