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Report for CCDS21623.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21623.1 Public Mus musculus 7 Or56b1 23 108 98 CCDS HistoryNCBI Gene:258309Re-query CCDS DB by CCDS ID:21623.1Re-query CCDS DB by GeneID:258309See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21623.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098171.3 ENSMUSP00000095773.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098171.3Link to Ensembl Protein Viewer:ENSMUSP00000095773.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098171Re-query CCDS DB by Protein ID:ENSMUSP00000095773
Original member Current member EBI ENSMUST00000215454.2 ENSMUSP00000150070.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215454.2Link to Ensembl Protein Viewer:ENSMUSP00000150070.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215454Re-query CCDS DB by Protein ID:ENSMUSP00000150070
Original member Current member EBI ENSMUST00000213297.1 ENSMUSP00000150620.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213297.1Link to Ensembl Protein Viewer:ENSMUSP00000150620.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213297Re-query CCDS DB by Protein ID:ENSMUSP00000150620
Original member Current member NCBI NM_146312.2 NP_666424.2 Accepted alive Link to Nucleotide Sequence:NM_146312.2Link to Protein Sequence:NP_666424.2Re-query CCDS DB by Nucleotide ID:NM_146312Re-query CCDS DB by Protein ID:NP_666424Link to BLAST:NP_666424.2

Chromosomal Locations for CCDS 21623.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 104635676 104636635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGTCTGCGTCTCTCAAAGCCTTCAATAGTTCCAAGTCCCAGGTGTCTGAGTTCATCCTGCTAGGATTCC
CAGGCATTCACAGCTGGCAGCATTGGCTCTCCCTACCATTTACTTTGCTCTACCTTTCAGCAATAGGGAC
AAACGTGCTCATTCTCATCATCATCTGTCAGGATCCTTCTCTGAAGCAGCCCATGTACCTTTTCTTAGGT
ATCCTCTCTGTGGTGGACATGGGCCTTGCCACCACCATCATGCCTAAGATCCTGGCCATCTTCTGGTTTG
ATGCCAAGGTCATTAGCCTTCCTGAGTGTTTTGCTCAGATCTATGCCATTCACTGCTTTGTAGGCATGGA
GTCCGGTATCTTCCTCTGCATGGCTTTTGACAGATATGTAGCTATTTGCTATCCTCTCCGCTATTCATCA
ATTATTACCAACTCCTTGATCTTAAAAGCCACACTGTTTATGGTGCTGAGAAATGGCTTGTGTGTCATTC
CAGTGCCTGTGCTTGCAGCCCAGCGGAATTATTGTTCAAGAAATGAAATCGATCATTGCCTGTGCTCAAA
CCTTGGAGTCACAAGCCTGGCATGTGATGATAGGAGGCCAAATAGCATTTGCCAGTTAATCCTGGCATGG
GTTGGAATGGGGAGTGACCTGGGTCTCATAATATTGTCATATACTTTGATTCTGCGCTCTGTACTCAGAC
TCAATTCGGCTGAAGCTGTTTCTAAGGCTCTGAACACTTGTAGCTCCCACCTCATCCTCATCCTCTTCTT
CTACACTGTTGTTGTAGTGATTTCAGTAACTCACTTGGCAGAGACCAAGGCCACCTTGATCCCAGTTTTG
CTCAATGTGATGCACAATATCATTCCTCCTTCACTCAACCCTATTGTGTATGCACTTAGGACCAGAGAAC
TCAGGCGGGGCTTCCAAAAGGTGTTTTGTCGGAGCTTACAAGAAAAATAA

Translation (319 aa):
MSASLKAFNSSKSQVSEFILLGFPGIHSWQHWLSLPFTLLYLSAIGTNVLILIIICQDPSLKQPMYLFLG
ILSVVDMGLATTIMPKILAIFWFDAKVISLPECFAQIYAIHCFVGMESGIFLCMAFDRYVAICYPLRYSS
IITNSLILKATLFMVLRNGLCVIPVPVLAAQRNYCSRNEIDHCLCSNLGVTSLACDDRRPNSICQLILAW
VGMGSDLGLIILSYTLILRSVLRLNSAEAVSKALNTCSSHLILILFFYTVVVVISVTHLAETKATLIPVL
LNVMHNIIPPSLNPIVYALRTRELRRGFQKVFCRSLQEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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