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Report for CCDS21742.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21742.1 Public Mus musculus 7 Tmem41b 23 108 98 CCDS HistoryNCBI Gene:233724Re-query CCDS DB by CCDS ID:21742.1Re-query CCDS DB by GeneID:233724See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21742.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094097.11 ENSMUSP00000091641.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094097.11Link to Ensembl Protein Viewer:ENSMUSP00000091641.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000094097Re-query CCDS DB by Protein ID:ENSMUSP00000091641
Original member Current member EBI ENSMUST00000118429.7 ENSMUSP00000112574.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118429.7Link to Ensembl Protein Viewer:ENSMUSP00000112574.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118429Re-query CCDS DB by Protein ID:ENSMUSP00000112574
Original member Current member NCBI NM_153525.5 NP_705745.3 Accepted alive Link to Nucleotide Sequence:NM_153525.5Link to Protein Sequence:NP_705745.3Re-query CCDS DB by Nucleotide ID:NM_153525Re-query CCDS DB by Protein ID:NP_705745Link to BLAST:NP_705745.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705745.3 291 Q8K1A5-1 291 100% 0 0

Chromosomal Locations for CCDS 21742.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 109974782 109974951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109976595 109976733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109978710 109978814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109979389 109979482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109980989 109981117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109982656 109982773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109985962 109986082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGGCGAAAGGCAGAGTGGCTGATCGATCGCCCACCGAAATGTTGCACTCGACCCCAGCCGGGGACCGGG
CAGTGAGGACCCAGGGTTCCGCCGCGCCTGGCAGCAAAGATCATCTGAACGAAAAGCCTTGTGCAGAAGC
TGGATCAGCAAGAACATCACTCCTTATACTGGTGTCCATTTTTTCATGTGCAGCTTTTGTTATGTTTTTG
GTATATAAAAATTTTCCTCAGCTTAGTGAGGAAGAGAGGGTGAATATGAAGGTTCCGAGAGATATGGATG
ACGCCAAGGCTCTAGGAAAAGTTCTCTCCAAATATAAGGATACCTTTTATGTACAAGTATTGGTTGCTTA
TTTTGCTACATATATTTTTTTGCAAACATTTGCTATCCCAGGTTCCATATTCCTCAGTATACTCTCCGGG
TTCCTTTATCCCTTCCCACTTGCCTTATTCCTTGTTTGTTTGTGCTCCGGACTTGGTGCCTCATTCTGCT
ACATGCTCTCCTACTTAGTTGGAAGACCCGTTGTATACAAATACCTAACAGAGAAGGCAGTGAAATGGTC
ACAGCAGGTAGAGCGTCACAGAGAACATCTTATTAACTACATTATATTTTTGAGGATCACACCGTTTCTT
CCTAATTGGTTTATTAATATTACATCTCCTGTGATAAATGTACCATTGAAAGTGTTTTTTATTGGCACTT
TTCTAGGTGTTGCACCTCCTTCTTTTGTAGCAATCAAGGCAGGAACAACTCTGCATCAGCTTACAACAGC
AGGGGAAGCTGTTTCCTGGAGCTCGGTATTTATTCTGATGGTTTTGGCCCTTCTTTCTATCCTGCCAGCC
ATCTTCCAAAAACAACTAAAGCAGAAGTTTGAGTGA

Translation (291 aa):
MAKGRVADRSPTEMLHSTPAGDRAVRTQGSAAPGSKDHLNEKPCAEAGSARTSLLILVSIFSCAAFVMFL
VYKNFPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPGSIFLSILSG
FLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEKAVKWSQQVERHREHLINYIIFLRITPFL
PNWFINITSPVINVPLKVFFIGTFLGVAPPSFVAIKAGTTLHQLTTAGEAVSWSSVFILMVLALLSILPA
IFQKQLKQKFE


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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