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Report for CCDS21788.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21788.1 Public Mus musculus 7 Rexo5 23 108 98 CCDS HistoryNCBI Gene:434234Re-query CCDS DB by CCDS ID:21788.1Re-query CCDS DB by GeneID:434234See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21788.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084644.2 ENSMUSP00000081694.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084644.2Link to Ensembl Protein Viewer:ENSMUSP00000081694.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000084644Re-query CCDS DB by Protein ID:ENSMUSP00000081694
Original member Current member NCBI NM_028129.2 NP_082405.1 Accepted alive Link to Nucleotide Sequence:NM_028129.2Link to Protein Sequence:NP_082405.1Re-query CCDS DB by Nucleotide ID:NM_028129Re-query CCDS DB by Protein ID:NP_082405Link to BLAST:NP_082405.1

Chromosomal Locations for CCDS 21788.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 119805259 119805286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119818383 119818471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119819432 119819547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119823756 119823894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119824045 119824139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119825536 119825638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119827303 119827376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119828092 119828206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119832671 119832775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119834264 119834401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119843242 119843334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119843848 119844064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 119848732 119848757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGAAAACATTTCACTTCCCCTTACCAGGGTCTCCTAACTATGAAAACTTTATCCTTACCAAGTATACTG
GTTTCATAACAGATAGCAGTCCCCTCTTTGGACTTGACTGTGAAGTGTGCCTTACATCCATGGGGAAAGA
ACTAACACGCATCTCACTGGTTACTGAAGGAGGCTACTGTCTTATAGATGAACTTGTCAAGCCTGATCTC
AAGATTCTGGATTACCTTACCAGTTTTACAGGAATCACGAAGGAGATTCTTAACCCAGTGACAACAAAAC
TCAAAGATGTACAGAAGCTGTTAAGAGAACTGCTTCCTCCTGATGCTGTGTTAGTGGGCCATTGCCTAGA
CTTGGATCTCAGAGTATTAAAAATGATACATCCATATGTTATTGATACCTCATTGCTTTATGCTGGAAAA
CAAGGCAGAAGATTTAAGCTAACATTCTTAGCCAGAGTTATTTTGGGGAAGGATATTCAGTGTCCTAACA
AGCTTGGCCGGGATGGCATAGAAGATGCTAGAGCAGCTCTTGAGCTGCTTCAGTATTTTCTTAAGTACGG
GCCAAAGAAGATTGCAGAGTTCAATCTGGAGGCACTAGCAGCCAATCAGGAGCAAGGAGACAAGGAAGAA
GCTGCACATATGAGTGTTTTAAAATGCCTGGAGTCAATGGGTCAGAAACTCCTTTTCTTGACCCAGGATA
TAAATGAGCTTTCTTCTTATAGAAATTGTCAAACTATTAAATGCTCTTCAAATAAAAAGGTGCTTGAGCA
GGCCAGGGTGGAAGTCCCTTTGTTCCCCTTCAATATTGTGGAGTTCTCTTTTCAGCCCTTTCCACCCCTC
TTCGCTGAGGAGATGAAAAACAGTATGAAGACCAAGTGGACACAAATGTCAACTGTCTATGCTGGGCCAT
TTAGCAAAGATTGTAACGTCGGGGCTCTGAAGAAGGTGTTTAGTAGCTTGGGCCCAGTACACTCAATCAC
TCTTGTTCTTGAAACTTACAGGCCTTACTTCTCTATACAATATGAAGTCCTGGAAGCTGCTCAGCTGGCT
CTAGAGACCATGAATGGCAGTCTATTAGAAGGTTCCTGTATCAGGGTGCGCAGGCTTGTGACTGAACTTA
CCCTTGAGTGTGACACCCTTGTAAGAGAGCTAGAGCAAGATTCGGAGAACCAAGGTACTATATATGTGGC
TGGAATTGGTGAAACCTTTAAAGAACACCTGTTGGAGCAGTCCAACCTCTTCCCTGACCTGGAAGCTGTG
ATCCTGCCTAAAGAGGTTAAAAGCAGAAAGCAAAAAAACTACTGTTTCCTGATGCTTTTGGGTCGCACCC
TGGCCTAG

Translation (445 aa):
MKTFHFPLPGSPNYENFILTKYTGFITDSSPLFGLDCEVCLTSMGKELTRISLVTEGGYCLIDELVKPDL
KILDYLTSFTGITKEILNPVTTKLKDVQKLLRELLPPDAVLVGHCLDLDLRVLKMIHPYVIDTSLLYAGK
QGRRFKLTFLARVILGKDIQCPNKLGRDGIEDARAALELLQYFLKYGPKKIAEFNLEALAANQEQGDKEE
AAHMSVLKCLESMGQKLLFLTQDINELSSYRNCQTIKCSSNKKVLEQARVEVPLFPFNIVEFSFQPFPPL
FAEEMKNSMKTKWTQMSTVYAGPFSKDCNVGALKKVFSSLGPVHSITLVLETYRPYFSIQYEVLEAAQLA
LETMNGSLLEGSCIRVRRLVTELTLECDTLVRELEQDSENQGTIYVAGIGETFKEHLLEQSNLFPDLEAV
ILPKEVKSRKQKNYCFLMLLGRTLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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