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Report for CCDS21829.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21829.2 Public Mus musculus 7 Rabep2 23 108 98 CCDS HistoryNCBI Gene:70314Re-query CCDS DB by CCDS ID:21829.2Re-query CCDS DB by GeneID:70314See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 21829.2
The coding region has been updated to represent an alternative 5' splice pattern, resulting in the extension of the N-terminus to one that is better supported by available transcript and homology data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 21829.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106407.8 ENSMUSP00000102015.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106407.8Link to Ensembl Protein Viewer:ENSMUSP00000102015.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106407Re-query CCDS DB by Protein ID:ENSMUSP00000102015
Original member Current member NCBI NM_030566.2 NP_085043.2 Accepted alive Link to Nucleotide Sequence:NM_030566.2Link to Protein Sequence:NP_085043.2Re-query CCDS DB by Nucleotide ID:NM_030566Re-query CCDS DB by Protein ID:NP_085043Link to BLAST:NP_085043.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_085043.2 554 Q91WG2-3 554 100% 0 0

Chromosomal Locations for CCDS 21829.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 126429132 126429156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126429576 126429785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126435660 126435817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126438370 126438480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126438562 126438906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126440166 126440261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126440348 126440446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126441837 126441992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126444130 126444307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126444418 126444429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126444523 126444578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126444820 126444936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126445297 126445398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1665 nt):
ATGGCAGCTGCGCCAGCAACCCTAGCGCTGGATCCCCAGCCCCAAGAGAAGCAAAAGGATGCATCCGAGT
CAAGTGAGCTCAGTCGGCTTCGTGCCGAACTGGCCGGTGCCCTGGCAGAAATGGAAACCATGAAGGCTGT
AGCTGAGGTGAGCGAGAGCACCAAGGCGGAGGCAGTGGCTGCAGTGCAGAGACAGTGCCAAGAGGAGGTG
GCCTCCCTGCAGGCCATCCTGAAAGACTCCATCAGCAGCTACGAGACCCAGATCGCAGCCCTGAAACAGG
AGCGGCAGCAGCAACAGCAGGACTTTGAGGAGAAGGATCGAGAGCTGGGCCACCTCAAACAGCTGCTGGC
CCGGGCCCACCCTTTGGACTCCTTGGAGAAGCAAATGGAAAAGGCTCATGAAGACTCGGAAAAGCTTCGA
GAGATCGTGTTGCCCATGGAGCAGGAGATTACCGAGCTGAAGGGGAAGCTGCAGAGGGCGGAAGAGCTGA
TCCAAGAGATCCAGAGACGACCACGGCAGCCTGCCTCCCTGCATGGCTCCACAGAGTTGCTCCCTCTGTC
GAGGAACCCCTCACCCCCACTGGAACCCTTGGAGGAGCCGAGCGGAGACGCCGGCCCAGCCGCCGAGGCC
TTTGCCCACAACTGCGATGACAGTGCCTCCATCTCTTCCTTCTCCCTCGGTGGGGCCGCCGGCAGTGCCT
CCCTACGAGGCCCCCAAGGCCTCAGCCCTGAGCAGGAAGAGACTGCTTCTCTGGTGTCTACTGGCACTCT
GGTCCCTGAGGGCATCTTCCTGCCCCCTCCTGGGTACCAGCTTGTTCCAGATAGCCAGTGGGAGCAACTG
CAGGTAGAGGGGCGGCAGCTGCAGAAGGAGCTGGAAAGTGTCAGCCGGGAGCGGGATGAGCTGCAGGAAG
GACTAAGACGGAGCAATGAAGACTGTGCCAAGCAGATGCAGGTGCTCCTGGCCCAGGTCCAGAACTCAGA
GCAGCTGCTCCGAACTCTGCAAGGAACTGTGAGCCAGGCCCAAGAGCGCGTGCAGCTGCAGATGGCAGAA
CTGGCCACTTCTCACAAGTGCCTGAGCCAAGAGGTTAAAAGACTGAATGAAGAAAATCAAGGGCTCCGGG
CTGAGCAGCTGCCATCCTCTGCCCTTCAGGGCTCAGAGCAGCGGGAGGACCAGGACGAGGCCCTGCCAAG
CTCCATACAGGAGCTACATCTGCTGGTGCAGAATACCAGGCAACAGGCGCGGGCCAGGCAGCAGGCACAG
GAGCATGAGGCTGAGCGCCTGCGCATTGAAATTGTGAAGCTGCGGGAGGCACTGGACGAGGAGACAGCAG
CCAAGGCCAGTCTGGAGAGACAGCTGAGGGTGCAGCGAGAAGAGACAGACGTGCTGGAGGCCTCACTGTG
CAGCCTGAGAATAGAGACGGAGCGGGTCCAGCAGGAGCAGCGCAAGGCCCAGCTCACGGATCTCCTCTCA
GAGCAGAGAGCCAAGACACTCCGGCTGCAGGCTGAGCTGGAGACCAGTGAACAGGTGCAGAGGGACTTTG
TACGGCTGTCCCAGGCCCTACAGGTACGCCTGGAGCGGATCCGCCAAGCAGAGACTCTGCAGCAAGTGCG
TAGCATCCTGGATGAGGCGCCCCTCAGGGACATCAGGGACATTAAAGACTCTTGA

Translation (554 aa):
MAAAPATLALDPQPQEKQKDASESSELSRLRAELAGALAEMETMKAVAEVSESTKAEAVAAVQRQCQEEV
ASLQAILKDSISSYETQIAALKQERQQQQQDFEEKDRELGHLKQLLARAHPLDSLEKQMEKAHEDSEKLR
EIVLPMEQEITELKGKLQRAEELIQEIQRRPRQPASLHGSTELLPLSRNPSPPLEPLEEPSGDAGPAAEA
FAHNCDDSASISSFSLGGAAGSASLRGPQGLSPEQEETASLVSTGTLVPEGIFLPPPGYQLVPDSQWEQL
QVEGRQLQKELESVSRERDELQEGLRRSNEDCAKQMQVLLAQVQNSEQLLRTLQGTVSQAQERVQLQMAE
LATSHKCLSQEVKRLNEENQGLRAEQLPSSALQGSEQREDQDEALPSSIQELHLLVQNTRQQARARQQAQ
EHEAERLRIEIVKLREALDEETAAKASLERQLRVQREETDVLEASLCSLRIETERVQQEQRKAQLTDLLS
EQRAKTLRLQAELETSEQVQRDFVRLSQALQVRLERIRQAETLQQVRSILDEAPLRDIRDIKDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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