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Report for CCDS21859.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21859.1 Public Mus musculus 7 Cd2bp2 23 108 98 CCDS HistoryNCBI Gene:70233Re-query CCDS DB by CCDS ID:21859.1Re-query CCDS DB by GeneID:70233See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21859.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035771.4 ENSMUSP00000044790.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035771.4Link to Ensembl Protein Viewer:ENSMUSP00000044790.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000035771Re-query CCDS DB by Protein ID:ENSMUSP00000044790
Original member Current member EBI ENSMUST00000166791.7 ENSMUSP00000132963.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166791.7Link to Ensembl Protein Viewer:ENSMUSP00000132963.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166791Re-query CCDS DB by Protein ID:ENSMUSP00000132963
Original member Current member EBI ENSMUST00000205316.1 ENSMUSP00000145888.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000205316.1Link to Ensembl Protein Viewer:ENSMUSP00000145888.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000205316Re-query CCDS DB by Protein ID:ENSMUSP00000145888
Original member Current member EBI ENSMUST00000206026.1 ENSMUSP00000146167.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206026.1Link to Ensembl Protein Viewer:ENSMUSP00000146167.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000206026Re-query CCDS DB by Protein ID:ENSMUSP00000146167
Original member Current member NCBI NM_001285905.1 NP_001272834.1 Accepted alive Link to Nucleotide Sequence:NM_001285905.1Link to Protein Sequence:NP_001272834.1Re-query CCDS DB by Nucleotide ID:NM_001285905Re-query CCDS DB by Protein ID:NP_001272834Link to BLAST:NP_001272834.1
Original member Current member NCBI NM_001285906.1 NP_001272835.1 Accepted alive Link to Nucleotide Sequence:NM_001285906.1Link to Protein Sequence:NP_001272835.1Re-query CCDS DB by Nucleotide ID:NM_001285906Re-query CCDS DB by Protein ID:NP_001272835Link to BLAST:NP_001272835.1
Original member Current member NCBI NM_001285907.1 NP_001272836.1 Accepted alive Link to Nucleotide Sequence:NM_001285907.1Link to Protein Sequence:NP_001272836.1Re-query CCDS DB by Nucleotide ID:NM_001285907Re-query CCDS DB by Protein ID:NP_001272836Link to BLAST:NP_001272836.1
Original member Current member NCBI NM_001357817.1 NP_001344746.1 Accepted alive Link to Nucleotide Sequence:NM_001357817.1Link to Protein Sequence:NP_001344746.1Re-query CCDS DB by Nucleotide ID:NM_001357817Re-query CCDS DB by Protein ID:NP_001344746Link to BLAST:NP_001344746.1
Original member Current member NCBI NM_027353.4 NP_081629.1 Accepted alive Link to Nucleotide Sequence:NM_027353.4Link to Protein Sequence:NP_081629.1Re-query CCDS DB by Nucleotide ID:NM_027353Re-query CCDS DB by Protein ID:NP_081629Link to BLAST:NP_081629.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272834.1 342 Q9CWK3 342 100% 0 0
NP_001272835.1 342 Q9CWK3 342 100% 0 0
NP_001272836.1 342 Q9CWK3 342 100% 0 0
NP_001344746.1 342 Q9CWK3 342 100% 0 0
NP_081629.1 342 Q9CWK3 342 100% 0 0

Chromosomal Locations for CCDS 21859.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 127193820 127193930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127194015 127194121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127194203 127194641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127194744 127194901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127195023 127195158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127195361 127195438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1029 nt):
ATGCCAAAGAGGAAAGTGACTTTTCAGGGTGTTGGAGATGAGGATGGTGAAGATGAAATCAGTGTGCCCA
AAAAGAAGCTGGTGGACCCTGTGGCTGCAGCAGGTGGTCCTGGGAGCCGCTTCAAAGGCAAGCACTCTTT
AGACAGTGATGAAGAGGATGATGATGAGGAAGGGTCCAGCAAATATGATATCCTGGCCTCAGAGGATGTA
GAAGGTCAGGAAGCAGCTACTCTCCCTAGTGAGGGCGGTGTGAGGATCACACCCTTCAACCTGCAGGAAG
AGATGGAGGAAGGCCACTTTGATGCTGATGGCAACTACTTCCTGAACCAGGATGCGCAGATCCGAGACAG
CTGGCTGGACAACATTGACTGGGTGAGGATCAAGGAACGGCCCCCTGATAAGCACCAGGTTTCAGACTCG
GAGGAGGAAGACAGCCTGGGTCAGACTCCAATGAGCGCCCAAGCACTCCTGGAGGGACTTTTGGAGTTGT
TGTTGCCAAGAGAGACAGTGGCTGGGGCCCTTAGGCGGCTGGGGGCCCGAGGAGGAGGCAAAGGGAGCAA
CAGCAAGGGGACTGGACGGCCCAATTCCCCCCAGCGGCTAGACCGGCTGTCTGGGTTAGCTGACCAAATG
GTGGCACGAGGCAACCTTGGTGTGTACCAGGAAACAAGGGAACGGTTGGCTATGCGACTGAAGGGTTTGG
GGTGTCGGGCCCAGGGATCCCATGACCCCACACCTCCACCCTCCCTGGACATGTTTGCTGAGGAAGTAGC
AGAGGGTGAACTGGAAACCCCAACCCCTACCCAAAGAGAGGAGGCAGAGTCAGCAGGAGATGGCCTGATG
GATGTGATGTGGGAGTATAAATGGGAGAACACGGGGGACGCCGAGCTGTATGGACCCTTCACCAGTGCCC
AGATGCAGACGTGGGTGAGTGAAGGTTACTTCCCGGATGGTGTTTATTGTCGGAAGCTGGACCCTCCGGG
CGGCCAGTTCTACAACTCCAAGCGCATTGATTTTGAGCTGTACACGTGA

Translation (342 aa):
MPKRKVTFQGVGDEDGEDEISVPKKKLVDPVAAAGGPGSRFKGKHSLDSDEEDDDEEGSSKYDILASEDV
EGQEAATLPSEGGVRITPFNLQEEMEEGHFDADGNYFLNQDAQIRDSWLDNIDWVRIKERPPDKHQVSDS
EEEDSLGQTPMSAQALLEGLLELLLPRETVAGALRRLGARGGGKGSNSKGTGRPNSPQRLDRLSGLADQM
VARGNLGVYQETRERLAMRLKGLGCRAQGSHDPTPPPSLDMFAEEVAEGELETPTPTQREEAESAGDGLM
DVMWEYKWENTGDAELYGPFTSAQMQTWVSEGYFPDGVYCRKLDPPGGQFYNSKRIDFELYT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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