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Report for CCDS21891.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21891.1 Public Mus musculus 7 Cox6a2 23 108 98 CCDS HistoryNCBI Gene:12862Re-query CCDS DB by CCDS ID:21891.1Re-query CCDS DB by GeneID:12862See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21891.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033049.8 ENSMUSP00000033049.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033049.8Link to Ensembl Protein Viewer:ENSMUSP00000033049.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033049Re-query CCDS DB by Protein ID:ENSMUSP00000033049
Original member Current member NCBI NM_009943.2 NP_034073.2 Accepted alive Link to Nucleotide Sequence:NM_009943.2Link to Protein Sequence:NP_034073.2Re-query CCDS DB by Nucleotide ID:NM_009943Re-query CCDS DB by Protein ID:NP_034073Link to BLAST:NP_034073.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034073.2 97 P43023 97 100% 0 0

Chromosomal Locations for CCDS 21891.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 128205729 128205812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128205900 128206036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128206223 128206295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (294 nt):
ATGGCTCTGCCTCTAAAGGTCCTGAGCCGGAGCATGGCCAGCGCAGCCAAAGGAGACCATGGAGGGGCAG
GAGCCAACACCTGGCGCCTCCTGACCTTTGTGCTGGCTCTTCCCGGCGTAGCCCTCTGCTCCCTTAACTG
CTGGATGCACGCTGGCCACCACGAGCGCCCAGAGTTCATCCCGTATCACCACCTCCGCATCCGAACCAAG
CCCTTCGCCTGGGGGGACGGCAACCACACGCTTTTCCACAATCCCCACGTCAATCCTTTGCCCACCGGTT
ATGAGCACCCTTGA

Translation (97 aa):
MALPLKVLSRSMASAAKGDHGGAGANTWRLLTFVLALPGVALCSLNCWMHAGHHERPEFIPYHHLRIRTK
PFAWGDGNHTLFHNPHVNPLPTGYEHP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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