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Report for CCDS21911.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21911.1 Public Mus musculus 7 Cdcp3 23 108 98 CCDS HistoryNCBI Gene:71395Re-query CCDS DB by CCDS ID:21911.1Re-query CCDS DB by GeneID:71395See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21911.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050586.5 ENSMUSP00000061529.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050586.5Link to Ensembl Protein Viewer:ENSMUSP00000061529.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000050586Re-query CCDS DB by Protein ID:ENSMUSP00000061529
Original member Current member NCBI NM_175166.3 NP_780375.2 Accepted alive Link to Nucleotide Sequence:NM_175166.3Link to Protein Sequence:NP_780375.2Re-query CCDS DB by Nucleotide ID:NM_175166Re-query CCDS DB by Protein ID:NP_780375Link to BLAST:NP_780375.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780375.2 841 Q8BZE1 841 100% 0 0

Chromosomal Locations for CCDS 21911.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 131174421 131174484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131181944 131182042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131188745 131188777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131194314 131194343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131196490 131196552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131201732 131201797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131210228 131210287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131222593 131222910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131223418 131223447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131224962 131225000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131226620 131226767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131228789 131228979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131229969 131229998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131234750 131234791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131235044 131235097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131237966 131238283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131239516 131239548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131241979 131242011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131243031 131243184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131244654 131244871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131246490 131246807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131247459 131247485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131250405 131250562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2526 nt):
ATGGGCTGCCACACCCGCCTACTTTGGCTGCTGTTCTTCCATGCTGCGATCCTACCTGAAGCAGCTTGTT
ACAGGAGGGACTTCAGAGGATCCGGAGCAAGGCTGGGGAAGGAACGGCCTAAGAGAAGCTCCATCCAGGG
CGTGTCTGAGGAGCAGCAAGAAGGACATGGTGAGGAGCCAGCAGCAAGGCCTCAAGGTGATGGAAATCCA
GCCACCATATTATCAGTTTTGCCTGCTGCCATCTCCACTCAGCCATCTTCTAAGCTTGCCCCGAGTTCCT
CTGTATCAGTCCTACCTGTGGCTGACTCAGCACCTGGCAGTCGAAGAGCACATGCGCCCAGGATCAACCT
CAAAGGTGCTGATATGTTACCAGACCTCACTCCAGTAATAGATCCGGAGTCGTACAAGCCATCAGGAGGC
TGGGCCCCCGTGAGGCTAGCAGGCAACCACGGGAGCTGTGCGGGCCGTGTAGAGCTCTTCTACCAGGGAG
TCTGGGGGACTGTGTGTGATGACCTCTGGGACCTTCCACAAGCGAACATCATCTGCAGGCAGCTGGGGTG
CGGCTGGGCTGTTTCGGCCCTGAGCGAAGCTTACTTTGGGCAAGGTTCTGGGAAGATTCTCCTTGATAAT
GTTCATTGCAAGGGGCACGAGGAACACCTGGAGGAGTGCTCCCACCTTGGGTGGTTCTCCCACAACTGTG
ACCACAGTGAAGACGCCAGTGTCATCTGTTCAGATGCTGAATACGGAACGGTCACACTCTCAGATCCCCC
ATTGGCTGCCATGGAAGGAGCAACGAATCCAGAAAAATCTCGGTGTGGTGGAGTTATTACCAGTGCACCC
GGAAAAATTAAGAATCCCCCAATGAATGAAATGCATGACAACATAACCTGTGTGTGGGAGATCAGGGCAA
GCACCTCTGAGCATATACGGCTGGCGTTCCCATCTCTTGACCTTGACTGCACCAACGAGTATTTTGAAAT
CCTGGATGGCCCTCCGTCCTCCACAAAATCCCTGGGGAAACCCTGCCGTGGGTTGCACATCACCTTCGCA
TCTCACTCCAGCTCAATGACCCTCGTGTACTTCCGAGGTGAAAACAACATTGGGAAAAACTTCATGGCAT
ATTATTATTTTGAAGCCAAAGAGATGACAACAAAGACCCCGTATCTGATCACCATCCCCACAGCAACTTC
CAAGATGGTAACAGAAAGACCACAATTCTCAAATACTCCCAGTGGGAACATCTCACCTCTTCCCGTATCT
GACTCAGGAGACTGGCCAGAGCTTCGCCTAGTGGGTGGTTCCAGTCGGTGCTCAGGACGAGTGGAAATCC
TCTACCAGGGAGTCTGGGGCACCATATGTGATGACCTGTGGGGTTCAAATGAAGCTGAGGTTGTATGCCG
CCAGCTAGAGTGTGGCCAGGCTGTTTCTAGCCTTGGTGAGGCTTACTTTGGCCCAGGCTCTGGAGAAATC
TTCCTAGACAACCTTCAGTGTTCTGGAATGGAACATTACCTCGGCCAGTGTCCACATTCTGGATGGTCTG
AACATAACTGTGGCCACCATGAGGATGCTGGTGTTATCTGCTCAGATTCAGATGCCCCTCCTCCACCTAT
GCCGCCAGGTCCTCCTCCAACTCCTCAGGATCCACTAACAGGAGGAAGTAACTCTTGTGGAGGAGTCATT
TCCAGCCTCTCGGGTTCATTTACGAGTCCACGGTACCCAGAAAACTATCCAACAGACATCCAATGTGTGT
GGGAGATCCATGTGGAGAAAAATTTCCGCATAGAACTCATGATTCCGAATTTGAACCTGGAAGATATCCT
TGGATGTCCCTATGACTCAATTGAGATCTTCGATGGCCCCAGAATTGCATCACTCTCCATGGGGAAGTTT
TGTGCCCCATCAGCTGTGGTATTTTTCTCCTCCTCAGACATCTTGACAGTGGTGTTCCGCAGCGATTATA
TGACAACAAACACTGGCTTTTATGCTTTCTTCAATGCAATTCCACAAGATGGAAGAGAGTCAGAAGAAAG
ACCAGTGCTGCGGTTGGCAGGCAGCTCTGGACAGTGCTCGGGACGCGTGGAGATCCTCCACCAGGGGGCC
TGGGGCACCGTGTGTGATGACCTGTGGGACCTGAATGAAGCTGAGGTTGTGTGCAGACAGCTGGGCTGTG
GCCATGCCATTGCTGCTCCTGGAAGTGCCTACTTTGGTCCAGGCTCTGGAAACATCCTTTTGGACAACAT
TCAGTGTTCAGGAACGGAAAACCACTTTGGCCAGTGTTCCAGCTCTGCCTGGTTAGATCACAACTGTGGC
CACCATGAGGATGCTGGCGTTATCTGCTCAGATGCAGATGTGACTCCTTCACCAACAGAAGGAAGTCACT
CCTGTGGAGGAGTCATTTCAAATCTCTCGGGCTCCTTCTCCAGTCCTTGGTATCCTACTAACTACCCCAC
GGACACAGAGTGCATCTGGGAGATACATGTGGCTGAGAAGTTCAACATTGAGCTGACAATCCCAAGTCTG
AAGTAA

Translation (841 aa):
MGCHTRLLWLLFFHAAILPEAACYRRDFRGSGARLGKERPKRSSIQGVSEEQQEGHGEEPAARPQGDGNP
ATILSVLPAAISTQPSSKLAPSSSVSVLPVADSAPGSRRAHAPRINLKGADMLPDLTPVIDPESYKPSGG
WAPVRLAGNHGSCAGRVELFYQGVWGTVCDDLWDLPQANIICRQLGCGWAVSALSEAYFGQGSGKILLDN
VHCKGHEEHLEECSHLGWFSHNCDHSEDASVICSDAEYGTVTLSDPPLAAMEGATNPEKSRCGGVITSAP
GKIKNPPMNEMHDNITCVWEIRASTSEHIRLAFPSLDLDCTNEYFEILDGPPSSTKSLGKPCRGLHITFA
SHSSSMTLVYFRGENNIGKNFMAYYYFEAKEMTTKTPYLITIPTATSKMVTERPQFSNTPSGNISPLPVS
DSGDWPELRLVGGSSRCSGRVEILYQGVWGTICDDLWGSNEAEVVCRQLECGQAVSSLGEAYFGPGSGEI
FLDNLQCSGMEHYLGQCPHSGWSEHNCGHHEDAGVICSDSDAPPPPMPPGPPPTPQDPLTGGSNSCGGVI
SSLSGSFTSPRYPENYPTDIQCVWEIHVEKNFRIELMIPNLNLEDILGCPYDSIEIFDGPRIASLSMGKF
CAPSAVVFFSSSDILTVVFRSDYMTTNTGFYAFFNAIPQDGRESEERPVLRLAGSSGQCSGRVEILHQGA
WGTVCDDLWDLNEAEVVCRQLGCGHAIAAPGSAYFGPGSGNILLDNIQCSGTENHFGQCSSSAWLDHNCG
HHEDAGVICSDADVTPSPTEGSHSCGGVISNLSGSFSSPWYPTNYPTDTECIWEIHVAEKFNIELTIPSL
K


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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