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Report for CCDS21964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21964.1 Public Mus musculus 7 Echs1 23 108 98 CCDS HistoryNCBI Gene:93747Re-query CCDS DB by CCDS ID:21964.1Re-query CCDS DB by GeneID:93747See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21964.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026538.12 ENSMUSP00000026538.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026538.12Link to Ensembl Protein Viewer:ENSMUSP00000026538.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000026538Re-query CCDS DB by Protein ID:ENSMUSP00000026538
Original member Current member NCBI NM_053119.3 NP_444349.1 Accepted alive Link to Nucleotide Sequence:NM_053119.3Link to Protein Sequence:NP_444349.1Re-query CCDS DB by Nucleotide ID:NM_053119Re-query CCDS DB by Protein ID:NP_444349Link to BLAST:NP_444349.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444349.1 290 Q8BH95 290 100% 0 0

Chromosomal Locations for CCDS 21964.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 140106312 140106377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140108084 140108151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140109987 140110106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140110539 140110643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140111696 140111795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140112419 140112546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140112936 140113133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140116307 140116394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGGCGGCCCTGCGTGCTCTGCTGCCCAGAGCCTGTAGCTCACTGTTGTCCTCAGTCCGCTGCCCAGAAC
TACGGCGCTTCGCCTCGGGTGCTAACTTTCAGTACATCATCACAGAAAAGAAAGGAAAGAATAGCAGCGT
GGGGCTGATCCAGTTGAACCGCCCCAAAGCACTCAATGCACTTTGCAATGGCCTGATTGAGGAGCTCAAC
CAAGCACTGGAGACCTTTGAGCAAGATCCTGCTGTGGGTGCCATTGTGCTCACTGGTGGGGATAAGGCCT
TTGCAGCTGGAGCTGACATCAAGGAAATGCAGAACCGAACATTTCAGGACTGTTACTCCAGCAAGTTCCT
GAGCCACTGGGACCACATCACCCGGGTCAAGAAACCGGTCATCGCAGCTGTCAATGGTTATGCTCTTGGT
GGGGGTTGTGAACTTGCCATGATGTGTGATATCATCTATGCTGGCGAGAAAGCCCAGTTCGGACAGCCAG
AAATCCTCCTGGGGACCATCCCAGGTGCTGGAGGCACTCAGAGACTCACCCGAGCAGTCGGCAAATCGCT
AGCAATGGAGATGGTCCTCACTGGTGACCGCATCTCAGCTCAGGATGCAAAGCAGGCAGGTCTTGTAAGC
AAGATTTTTCCTGTTGAAAAACTGGTTGAAGAAGCCATCCAATGTGCAGAAAAAATTGCCAGCAATTCTA
AAATCGTAGTAGCCATGGCGAAAGAATCTGTGAATGCAGCCTTTGAGATGACGTTAACAGAAGGAAATAA
GCTGGAGAAGAGGCTTTTCTATTCCACCTTTGCCACCGATGACCGGAGAGAAGGGATGACTGCATTTGTA
GAGAAAAGGAAGGCCAACTTCAAAGACCACTGA

Translation (290 aa):
MAALRALLPRACSSLLSSVRCPELRRFASGANFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELN
QALETFEQDPAVGAIVLTGGDKAFAAGADIKEMQNRTFQDCYSSKFLSHWDHITRVKKPVIAAVNGYALG
GGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVS
KIFPVEKLVEEAIQCAEKIASNSKIVVAMAKESVNAAFEMTLTEGNKLEKRLFYSTFATDDRREGMTAFV
EKRKANFKDH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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