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Report for CCDS22067.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22067.1 Public Mus musculus 8 Stxbp2 23 108 98 CCDS HistoryNCBI Gene:20911Re-query CCDS DB by CCDS ID:22067.1Re-query CCDS DB by GeneID:20911See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22067.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160708.7 ENSMUSP00000125405.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160708.7Link to Ensembl Protein Viewer:ENSMUSP00000125405.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160708Re-query CCDS DB by Protein ID:ENSMUSP00000125405
Original member Current member NCBI NM_011503.5 NP_035633.1 Accepted alive Link to Nucleotide Sequence:NM_011503.5Link to Protein Sequence:NP_035633.1Re-query CCDS DB by Nucleotide ID:NM_011503Re-query CCDS DB by Protein ID:NP_035633Link to BLAST:NP_035633.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035633.1 593 Q64324 593 100% 0 0

Chromosomal Locations for CCDS 22067.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 3631168 3631204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3632220 3632269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3632500 3632581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3633291 3633367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3633848 3633926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3634020 3634123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3634475 3634623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3635446 3635530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3635616 3635746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3635832 3635939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3636181 3636238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3636356 3636421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3636494 3636574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3637116 3637254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3639508 3639617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3641111 3641206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3641735 3641820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3641898 3642055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3642646 3642731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1782 nt):
ATGGCGCCCTTGGGGCTGAAGGCGGTGGTAGGGGAAAAAATTTTAAGCGGCGTCATCCGGAGCGTTAAGA
AGGATGGCGAGTGGAAGGTCCTCATCATGGATCACCCGAGCATGCGAATCTTGTCATCCTGTTGTAAAAT
GTCAGATATCCTGGCGGAGGGCATCACCATCGTGGAAGACATCAACAAACGGAGAGAACCCATTCCCAGC
TTGGAGGCAATTTATTTGCTGAGTCCCACGGAGAAGTCGGTTCAGGCCCTGATTGCGGACTTCCAGGGAA
CACCAACCTTCACCTACAAAGCAGCCCATATCTTCTTCACTGACACATGCCCTGAGCCCTTGTTCAGTGA
ACTGGGCCGCTCTCGCCTGGCGAAGGCGGTGAAGACATTGAAAGAGATCCACCTTGCCTTCCTCCCCTAT
GAGGCCCAGGTGTTCTCTCTGGATGCCCCACATAGCACCTACAACCTTTACTGTCCATTCCGAGCAGGGG
AGCGGGGGCGGCAGCTCGATGCACTGGCCCAGCAGATAGCCACACTGTGTGCCACTCTTCAGGAATACCC
ATCCATCCGATACCGCAAGGGTCCAGAAGACACAGCCCAGCTGGCCCATGCTGTCCTGGCCAAGCTGAAC
GCCTTCAAGGCAGACACTCCCAGTCTGGGCGAGGGCCCAGAGAAAACACGCTCACAGCTACTCATAATGG
ACCGGGCAGCAGACCCCGTGTCCCCACTATTACACGAACTCACGTTCCAAGCCATGGCCTATGATCTTCT
GGACATCGAACAGGACACATACAGGTATGAGACCACAGGGCTGAGTGAGTCCCGGGAGAAGGCTGTCCTC
CTGGATGAAGATGATGACCTGTGGGTGGAACTTCGGCACATGCACATAGCAGATGTTTCCAAGAAGGTCA
CAGAACTCCTGAAGACATTCTGTGAGAGTAAGAGGCTGACCACAGACAAGGCCAACATCAAAGACCTGTC
CCACATCCTGAAAAAGATGCCACAGTATCAGAAGGAGCTGAACAAGTACTCTACGCACCTGCATTTGGCA
GATGACTGCATGAAGCATTTCAAGGGCTCGGTGGAGAAGCTGTGCAGTGTGGAGCAGGACCTGGCCATGG
GCTCTGATGCAGAGGGTGAGAAGATCAAGGACGCCATGAAGCTGATTGTCCCGGTGCTGCTGGATGCCTC
GGTGCCACCCTACGACAAGATCCGGGTTCTGTTGCTCTACATCCTTCTGCGGAATGGGGTGAGTGAGGAG
AACCTGGCCAAGCTGATCCAGCATGCCAACGTGCAGTCGTACAGCAGCCTCATCCGGAATCTGGAGCAGC
TGGGCGGCACTGTCACCAACTCCGCGGGCTCAGGGACCTCTAGCCGGCTGGAGCGGAGAGAGCGCATGGA
GCCCACCTACCAGCTGTCTCGCTGGTCCCCAGTCATCAAGGATGTGATGGAGGATGTGGTGGAGGACCGG
CTAGACCGAAAGCTGTGGCCCTTTGTGTCTGACCCTGCCCCTGTGCCTAGCTCCCAGGCAGCTGTCAGCG
CTCGCTTTGGCCACTGGCACAAAAACAAAGCTGGAGTAGAGGCCCGGGCTGGGCCTAGGCTCATCGTGTA
CATTGTGGGTGGTGTCGCCATGTCGGAAATGAGGGCTGCCTATGAGGTGACCAGGGCCACTGAGGGCAAG
TGGGAGGTGCTCATAGGCTCTTCTCACATCCTTACTCCAACCCGCTTCCTCGATGACCTCAAGACACTGG
ATCAGAAGCTGGAGGGTGTGGCCCTGCCCTGA

Translation (593 aa):
MAPLGLKAVVGEKILSGVIRSVKKDGEWKVLIMDHPSMRILSSCCKMSDILAEGITIVEDINKRREPIPS
LEAIYLLSPTEKSVQALIADFQGTPTFTYKAAHIFFTDTCPEPLFSELGRSRLAKAVKTLKEIHLAFLPY
EAQVFSLDAPHSTYNLYCPFRAGERGRQLDALAQQIATLCATLQEYPSIRYRKGPEDTAQLAHAVLAKLN
AFKADTPSLGEGPEKTRSQLLIMDRAADPVSPLLHELTFQAMAYDLLDIEQDTYRYETTGLSESREKAVL
LDEDDDLWVELRHMHIADVSKKVTELLKTFCESKRLTTDKANIKDLSHILKKMPQYQKELNKYSTHLHLA
DDCMKHFKGSVEKLCSVEQDLAMGSDAEGEKIKDAMKLIVPVLLDASVPPYDKIRVLLLYILLRNGVSEE
NLAKLIQHANVQSYSSLIRNLEQLGGTVTNSAGSGTSSRLERRERMEPTYQLSRWSPVIKDVMEDVVEDR
LDRKLWPFVSDPAPVPSSQAAVSARFGHWHKNKAGVEARAGPRLIVYIVGGVAMSEMRAAYEVTRATEGK
WEVLIGSSHILTPTRFLDDLKTLDQKLEGVALP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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