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Report for CCDS221.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
221.1 Public Homo sapiens 1 CDC42 24 110 108 CCDS HistoryNCBI Gene:998Re-query CCDS DB by CCDS ID:221.1Re-query CCDS DB by GeneID:998See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 221.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344548.8 ENSP00000341072.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000344548.8Link to Ensembl Protein Viewer:ENSP00000341072.3Re-query CCDS DB by Nucleotide ID:ENST00000344548Re-query CCDS DB by Protein ID:ENSP00000341072
Original member Current member EBI ENST00000400259.5 ENSP00000383118.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000400259.5Link to Ensembl Protein Viewer:ENSP00000383118.1Re-query CCDS DB by Nucleotide ID:ENST00000400259Re-query CCDS DB by Protein ID:ENSP00000383118
Original member Current member EBI ENST00000411827.2 ENSP00000398327.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000411827.2Link to Ensembl Protein Viewer:ENSP00000398327.2Re-query CCDS DB by Nucleotide ID:ENST00000411827Re-query CCDS DB by Protein ID:ENSP00000398327
Original member Current member EBI ENST00000656825.1 ENSP00000499457.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000656825.1Link to Ensembl Protein Viewer:ENSP00000499457.1Re-query CCDS DB by Nucleotide ID:ENST00000656825Re-query CCDS DB by Protein ID:ENSP00000499457
Original member Current member EBI ENST00000662562.2 ENSP00000499612.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000662562.2Link to Ensembl Protein Viewer:ENSP00000499612.1Re-query CCDS DB by Nucleotide ID:ENST00000662562Re-query CCDS DB by Protein ID:ENSP00000499612
Original member Current member EBI ENST00000695796.1 ENSP00000512176.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000695796.1Link to Ensembl Protein Viewer:ENSP00000512176.1Re-query CCDS DB by Nucleotide ID:ENST00000695796Re-query CCDS DB by Protein ID:ENSP00000512176
Original member Current member EBI ENST00000695797.1 ENSP00000512177.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000695797.1Link to Ensembl Protein Viewer:ENSP00000512177.1Re-query CCDS DB by Nucleotide ID:ENST00000695797Re-query CCDS DB by Protein ID:ENSP00000512177
Original member Current member EBI ENST00000695798.1 ENSP00000512178.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000695798.1Link to Ensembl Protein Viewer:ENSP00000512178.1Re-query CCDS DB by Nucleotide ID:ENST00000695798Re-query CCDS DB by Protein ID:ENSP00000512178
Original member Current member EBI ENST00000695799.1 ENSP00000512179.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000695799.1Link to Ensembl Protein Viewer:ENSP00000512179.1Re-query CCDS DB by Nucleotide ID:ENST00000695799Re-query CCDS DB by Protein ID:ENSP00000512179
Original member Current member EBI ENST00000695800.1 ENSP00000512180.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000695800.1Link to Ensembl Protein Viewer:ENSP00000512180.1Re-query CCDS DB by Nucleotide ID:ENST00000695800Re-query CCDS DB by Protein ID:ENSP00000512180
Original member Current member EBI ENST00000695802.1 ENSP00000512182.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000695802.1Link to Ensembl Protein Viewer:ENSP00000512182.1Re-query CCDS DB by Nucleotide ID:ENST00000695802Re-query CCDS DB by Protein ID:ENSP00000512182
Original member Current member EBI ENST00000695856.1 ENSP00000512221.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000695856.1Link to Ensembl Protein Viewer:ENSP00000512221.1Re-query CCDS DB by Nucleotide ID:ENST00000695856Re-query CCDS DB by Protein ID:ENSP00000512221
Original member Current member NCBI NM_001039802.2 NP_001034891.1 Accepted alive Link to Nucleotide Sequence:NM_001039802.2Link to Protein Sequence:NP_001034891.1Re-query CCDS DB by Nucleotide ID:NM_001039802Re-query CCDS DB by Protein ID:NP_001034891Link to BLAST:NP_001034891.1
Original member Current member NCBI NM_001791.4 NP_001782.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001791.4Link to Protein Sequence:NP_001782.1Re-query CCDS DB by Nucleotide ID:NM_001791Re-query CCDS DB by Protein ID:NP_001782Link to BLAST:NP_001782.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034891.1 191 P60953 191 100% 0 0
NP_001782.1 191 P60953 191 100% 0 0

Chromosomal Locations for CCDS 221.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 22078479 22078583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 22081722 22081794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 22086439 22086548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 22086669 22086866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 22091428 22091517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGCAGACAATTAAGTGTGTTGTTGTGGGCGATGGTGCTGTTGGTAAAACATGTCTCCTGATATCCTACA
CAACAAACAAATTTCCATCGGAATATGTACCGACTGTTTTTGACAACTATGCAGTCACAGTTATGATTGG
TGGAGAACCATATACTCTTGGACTTTTTGATACTGCAGGGCAAGAGGATTATGACAGATTACGACCGCTG
AGTTATCCACAAACAGATGTATTTCTAGTCTGTTTTTCAGTGGTCTCTCCATCTTCATTTGAAAACGTGA
AAGAAAAGTGGGTGCCTGAGATAACTCACCACTGTCCAAAGACTCCTTTCTTGCTTGTTGGGACTCAAAT
TGATCTCAGAGATGACCCCTCTACTATTGAGAAACTTGCCAAGAACAAACAGAAGCCTATCACTCCAGAG
ACTGCTGAAAAGCTGGCCCGTGACCTGAAGGCTGTCAAGTATGTGGAGTGTTCTGCACTTACACAGAAAG
GCCTAAAGAATGTATTTGACGAAGCAATATTGGCTGCCCTGGAGCCTCCAGAACCGAAGAAGAGCCGCAG
GTGTGTGCTGCTATGA

Translation (191 aa):
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL
SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPE
TAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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