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Report for CCDS22172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22172.1 Public Mus musculus 8 Thsd1 23 108 98 CCDS HistoryNCBI Gene:56229Re-query CCDS DB by CCDS ID:22172.1Re-query CCDS DB by GeneID:56229See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22172.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069828.9 ENSMUSP00000067701.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069828.9Link to Ensembl Protein Viewer:ENSMUSP00000067701.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000069828Re-query CCDS DB by Protein ID:ENSMUSP00000067701
Original member Current member NCBI NM_019576.2 NP_062522.1 Accepted alive Link to Nucleotide Sequence:NM_019576.2Link to Protein Sequence:NP_062522.1Re-query CCDS DB by Nucleotide ID:NM_019576Re-query CCDS DB by Protein ID:NP_062522Link to BLAST:NP_062522.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062522.1 851 Q9JM61 851 99.8825% 0 1

Chromosomal Locations for CCDS 22172.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 22238540 22238597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22242997 22243956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22252153 22252311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22258292 22259670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2556 nt):
ATGAAACCCATGTTGAAAGACTTTTCAAATCTCTTGCTGGTGGTGCTCTGTGACTATGTCCTCGGAGAAG
CCGAATACCTCCTCCTCCAAGAGCCAGTCCATGTGGCACTGAGCGACAGAACGGTGTCAGTGGGTTTCCA
CTACCTCAGTGACGTCAACGGGACACTGAGGAATGTGTCTGTCATGCTGTGGGAGGCCAACACCAATCGG
ACTCTTACCACTAAGTACCTCCTGACCAACCAGGCCCAAGGAACACTCCAGTTTGAATGTTTCTACTTCA
AAGAGGCTGGTGACTACTGGTTTGTAATGATCCCGGAAGTGACAGACAATGGCACGCAAGTTCCACTCTG
GGAGAAAAGTGCCTTTCTGAAGGTAGAATGGCCTGTCTTTCACATTGATTTAAATAGGACAGCCAAGGCA
GCAGAAGGCACCTTTCAAGTGGGTGTTTTTACCACCCAACCGCTCTGCCTGTTTCCCGTGGACAAGCCAG
ACATGCTGGTGGATGTTATTTTCACTGACCGTCTTCCGGAGGCAAGAGCAAGTTTGGGACAGCCGCTGGA
GATCAGAGCCAGCAAAAGGACAAAACTCACTCAAGGTCAGTGGGTCGAGTTTGGCTGTGCACCGGTAGGG
GTGGAAGCCTACGTTACAGTCATGCTGAGGCTGTTGGGTCAAGACTCAGTCATTGCTTCTACGGGACCTA
TTGACCTGGCTCAAAAATTCGGATACAAATTGATGATGGCACCGGAAGTCACGTGTGAGTCTGTGCTGGA
GGTGATGGTACTGCCACCTCCTTGTGTCTTCGTCCAAGGAGTCCTGGCTGTTTACAAAGAAGCCCCCAAA
CGCCCGGAGGAGAGGACTTTCCAGGTGGCTGAAAACAGACTGCCCCTGGGAGAGAGGAGAACGGTGTTCA
ACTGCACTTTATTTGATGTAGGGAAGAACAAATACTGTTTTAACTTTGGAATTGTGAAGAAAGGCCATTT
TTCTGCAAAGGAATGCATGCTAATTCAGAGAAATATAGAAACTTGGGGACCATGGCAGCCGTGGAGCCCG
TGTAGCACCACGTGCGGGGATGCTGTCCGAGAGCGTCGCCGCCTGTGTGTCACTTCTTTCCCCTCCAGAC
CCAGCTGCTCTGGAATGTCCTCAGAGACCTCTCCATGCTCCCTGGAGGAGTGTGCTGTTTTCCGGCCACC
AGGCCCATCGCCTGTTTCACCCCAGGACCCTGTGAAGTCCAACAACGTGGTGACCGTCACAGGGATCTCC
CTGTGCCTGTTCATCATCTTTGCCACGGTGCTCATCACTCTCTGGAGGAGGTTTGGCCGAGCCCCCAAAT
GCAGCACGCCCGTTCGCCACAACTCCATCCATTCCCCTGGCTTCCGGAAGAACTCCGATGAAGAGAACAT
CTGCGAGCTGAGTGAGCCTCGCGGAAGCTTCTCGGATGCCGGTGACGGACCTAGGGGAAGCCCAGGGGAC
ACGGGCATCCCATTGACTTACAGGTGCAGTGCATCAGCGCCTCCTGAGGATGAGGCCTCGGGCAGTGAGA
GCTTCCAGTCCAACGCTCAGAAGATCATCCCGCCCTTGTTTAGCTACCGCCTTGCCCAGCAGCAGCTGAA
GGAGATGAAGAAGAAAGGGCTGACCGAGACCACCAAAGTGTACCACGTATCTCAAAGCCCCCTGACAGAC
ACTGTAGTGGATGCCACGGCCAGCCCTCCCTTAGACCTGGAATGCCCCGAAGAGGCTGCAGCAAGCAAGT
TCCGAATCAAATCTCCATTTCTGGACCAGCCTGGGGCAGGTACCGGGGAAAGGCCTCCCTCCAGGCTGGA
TGGCATCGTGCCTCCTCCTGGCTGTGCGGTCAGTCCCAGCCAGACCCTGATCCGAAAGTCACAGATAAGG
TCGACCGGTGGCAGAGATGGCTCATCGGAGAGGTGCCACTCCAGAAGTTCCCTCTTCAGGAGGACTGCTA
GTTTTCATGAAACCAAGCAGTCTCGCCCTTTCCGGGAGAGGAGTTTGTCAGCCCTGACTCCCCGCCAGGT
CCCCGCCTACAGTTCCAGGATGCGGACCTGGGACCAGATGGAGGATAGATGTCGGCCTCCCAGTCGAAGT
ACCCACCTGCTTCCAGAGAGACCAGAGCACTTCCAAGGGGCAGGTCGGACCAGCAGTCCTTTGGGTCCAC
TCTCCAAATCCTACACTGTGGGGCATCCCAGGAGGAAACCGGACCCAGGGGATCGTCAGGCCGGATTGGT
GGCAGGAGCTGAGAAAATGGAGCCTCACCGAGCTCACAGGGGACCGTCCCCCAGTCACAGGAGTGCCTCA
AGGAAGCAGTCTTCCCCCATTTTCCTCAAAGATAGCTACCAGAAAGTCAGTCAGCTTAGCCCTTCTCACT
TCAGAAAAGATAAATGCCAGAGCTTCCCCATCCACCCCGAGTTCGCCTTCTATGACAATACCTCTTTCCG
CCTCACCGAGGCTGAGCAGAGAATGCTGGACCTCCCAGGATACTTCGGCTCCAACGAAGAGGACGAAACC
ACAAGTACACTCAGTGTGGAGAAGTTAGTGATCTAG

Translation (851 aa):
MKPMLKDFSNLLLVVLCDYVLGEAEYLLLQEPVHVALSDRTVSVGFHYLSDVNGTLRNVSVMLWEANTNR
TLTTKYLLTNQAQGTLQFECFYFKEAGDYWFVMIPEVTDNGTQVPLWEKSAFLKVEWPVFHIDLNRTAKA
AEGTFQVGVFTTQPLCLFPVDKPDMLVDVIFTDRLPEARASLGQPLEIRASKRTKLTQGQWVEFGCAPVG
VEAYVTVMLRLLGQDSVIASTGPIDLAQKFGYKLMMAPEVTCESVLEVMVLPPPCVFVQGVLAVYKEAPK
RPEERTFQVAENRLPLGERRTVFNCTLFDVGKNKYCFNFGIVKKGHFSAKECMLIQRNIETWGPWQPWSP
CSTTCGDAVRERRRLCVTSFPSRPSCSGMSSETSPCSLEECAVFRPPGPSPVSPQDPVKSNNVVTVTGIS
LCLFIIFATVLITLWRRFGRAPKCSTPVRHNSIHSPGFRKNSDEENICELSEPRGSFSDAGDGPRGSPGD
TGIPLTYRCSASAPPEDEASGSESFQSNAQKIIPPLFSYRLAQQQLKEMKKKGLTETTKVYHVSQSPLTD
TVVDATASPPLDLECPEEAAASKFRIKSPFLDQPGAGTGERPPSRLDGIVPPPGCAVSPSQTLIRKSQIR
STGGRDGSSERCHSRSSLFRRTASFHETKQSRPFRERSLSALTPRQVPAYSSRMRTWDQMEDRCRPPSRS
THLLPERPEHFQGAGRTSSPLGPLSKSYTVGHPRRKPDPGDRQAGLVAGAEKMEPHRAHRGPSPSHRSAS
RKQSSPIFLKDSYQKVSQLSPSHFRKDKCQSFPIHPEFAFYDNTSFRLTEAEQRMLDLPGYFGSNEEDET
TSTLSVEKLVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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