NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22192.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22192.1 Public Mus musculus 8 Zmat4 23 108 98 CCDS HistoryNCBI Gene:320158Re-query CCDS DB by CCDS ID:22192.1Re-query CCDS DB by GeneID:320158See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22192.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042352.10 ENSMUSP00000049430.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042352.10Link to Ensembl Protein Viewer:ENSMUSP00000049430.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000042352Re-query CCDS DB by Protein ID:ENSMUSP00000049430
Original member Current member NCBI NM_177086.4 NP_796060.1 Accepted alive Link to Nucleotide Sequence:NM_177086.4Link to Protein Sequence:NP_796060.1Re-query CCDS DB by Nucleotide ID:NM_177086Re-query CCDS DB by Protein ID:NP_796060Link to BLAST:NP_796060.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796060.1 229 Q8BZ94-1 229 100% 0 0

Chromosomal Locations for CCDS 22192.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 23748404 23748505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23797342 23797431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23902015 23902171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23929096 23929323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24015116 24015212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24059746 24059761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGAAGTCCTCCGATATCGATCAGGATTTATTTACAGATAGCTACTGCAAGGTGTGCAGCGCACAGCTGA
TATCCGAGTCCCAGCGGGTGGCCCATTATGAGAGTCGAAAACATGCCAGCAAAGTCCGGCTGTATTACAT
GCTTCACCCCAGGGATGGTGGGTGTCCTGCCAAGAGGCTCCGAGCAGAAAATGGAAGCGATGCTGACATG
GTGGATAAGAATAAATGCTGTACACTCTGTAACATGTCCTTTACCTCAGCTGTGGTGGCCGACTCACATT
ACCAAGGCAAAATCCACGCCAAAAGGTTAAAACTGTTGCTAGGAGAGAAACCTCCACTGAAAACCACAGC
CGCTCCGCTGAGCTCACTTAAGGCTCCTCGAGTGGATACGGCCCCCGTGGTCGCATCTCCCTATCAAAGA
AGAGACTCAGACAGGTACTGCGGTCTCTGCGCAGCCTGGTTTAACAATCCTCTGATGGCCCAGCAGCATT
ACGAAGGCAAGAAACACAAAAAGAACGCAGCCCGCGTTGCCTTGCTAGAGCAGCTCGGAACATCTCTGGA
TCTGGGAGAACTGAGAGGTCTGAGACGTACTTACAGATGTACCACGTGCAGTGTGTCGCTCAACTCCATA
GAACAGTATCATGCACATCTGCAAGGATCAAAACATCAGACCAACCTGAAGAATAAGTAG

Translation (229 aa):
MKSSDIDQDLFTDSYCKVCSAQLISESQRVAHYESRKHASKVRLYYMLHPRDGGCPAKRLRAENGSDADM
VDKNKCCTLCNMSFTSAVVADSHYQGKIHAKRLKLLLGEKPPLKTTAAPLSSLKAPRVDTAPVVASPYQR
RDSDRYCGLCAAWFNNPLMAQQHYEGKKHKKNAARVALLEQLGTSLDLGELRGLRRTYRCTTCSVSLNSI
EQYHAHLQGSKHQTNLKNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH