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Report for CCDS222.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
222.1 Public Homo sapiens 1 CDC42 24 110 108 CCDS HistoryNCBI Gene:998Re-query CCDS DB by CCDS ID:222.1Re-query CCDS DB by GeneID:998See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 222.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000315554.15 ENSP00000314458.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000315554.15Link to Ensembl Protein Viewer:ENSP00000314458.8Re-query CCDS DB by Nucleotide ID:ENST00000315554Re-query CCDS DB by Protein ID:ENSP00000314458
Original member Current member EBI ENST00000695855.1 ENSP00000512220.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000695855.1Link to Ensembl Protein Viewer:ENSP00000512220.1Re-query CCDS DB by Nucleotide ID:ENST00000695855Re-query CCDS DB by Protein ID:ENSP00000512220
Original member Current member EBI ENST00000695857.1 ENSP00000512222.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000695857.1Link to Ensembl Protein Viewer:ENSP00000512222.1Re-query CCDS DB by Nucleotide ID:ENST00000695857Re-query CCDS DB by Protein ID:ENSP00000512222
Original member Current member EBI ENST00000695860.1 ENSP00000512225.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000695860.1Link to Ensembl Protein Viewer:ENSP00000512225.1Re-query CCDS DB by Nucleotide ID:ENST00000695860Re-query CCDS DB by Protein ID:ENSP00000512225
Original member Current member NCBI NM_044472.3 NP_426359.1 Accepted alive Link to Nucleotide Sequence:NM_044472.3Link to Protein Sequence:NP_426359.1Re-query CCDS DB by Nucleotide ID:NM_044472Re-query CCDS DB by Protein ID:NP_426359Link to BLAST:NP_426359.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_426359.1 191 P60953-1 191 100% 0 0

Chromosomal Locations for CCDS 222.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 22078479 22078583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 22081722 22081794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 22086439 22086548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 22086669 22086866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 22089943 22090032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGCAGACAATTAAGTGTGTTGTTGTGGGCGATGGTGCTGTTGGTAAAACATGTCTCCTGATATCCTACA
CAACAAACAAATTTCCATCGGAATATGTACCGACTGTTTTTGACAACTATGCAGTCACAGTTATGATTGG
TGGAGAACCATATACTCTTGGACTTTTTGATACTGCAGGGCAAGAGGATTATGACAGATTACGACCGCTG
AGTTATCCACAAACAGATGTATTTCTAGTCTGTTTTTCAGTGGTCTCTCCATCTTCATTTGAAAACGTGA
AAGAAAAGTGGGTGCCTGAGATAACTCACCACTGTCCAAAGACTCCTTTCTTGCTTGTTGGGACTCAAAT
TGATCTCAGAGATGACCCCTCTACTATTGAGAAACTTGCCAAGAACAAACAGAAGCCTATCACTCCAGAG
ACTGCTGAAAAGCTGGCCCGTGACCTGAAGGCTGTCAAGTATGTGGAGTGTTCTGCACTTACACAGAGAG
GTCTGAAGAATGTGTTTGATGAGGCTATCCTAGCTGCCCTCGAGCCTCCGGAAACTCAACCCAAAAGGAA
GTGCTGTATATTCTAA

Translation (191 aa):
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL
SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPE
TAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALEPPETQPKRKCCIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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