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Report for CCDS22309.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22309.2 Public Mus musculus 8 Wdr17 23 108 98 CCDS HistoryNCBI Gene:244484Re-query CCDS DB by CCDS ID:22309.2Re-query CCDS DB by GeneID:244484See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 22309.2
The coding region has been updated to extend the N-terminus to one that is also supported by available conservation data. The use of an alternative upstream start codon would result in a protein that is 24 aa longer.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22309.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000144711.8 ENSMUSP00000117710.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000144711.8Link to Ensembl Protein Viewer:ENSMUSP00000117710.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000144711Re-query CCDS DB by Protein ID:ENSMUSP00000117710
Original member NCBI NM_028220.3 NP_082496.3 Updated not alive Link to Nucleotide Sequence:NM_028220.3Link to Protein Sequence:NP_082496.3Re-query CCDS DB by Nucleotide ID:NM_028220Re-query CCDS DB by Protein ID:NP_082496
Current member NCBI NM_028220.4 NP_082496.3 Accepted alive Link to Nucleotide Sequence:NM_028220.4Link to Protein Sequence:NP_082496.3Re-query CCDS DB by Nucleotide ID:NM_028220Re-query CCDS DB by Protein ID:NP_082496Link to BLAST:NP_082496.3

Chromosomal Locations for CCDS 22309.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 54629791 54629910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54632313 54632496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54635445 54635543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54638287 54638388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54639401 54639503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54639836 54639977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54643114 54643225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54645338 54645358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54648220 54648359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54649133 54649232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54651287 54651378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54653879 54654011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54657195 54657259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54659584 54659739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54660772 54660897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54661216 54661346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54661433 54661582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54662849 54663051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54664966 54665130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54668349 54668435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54670301 54670383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54672485 54672576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54673530 54673698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54681346 54681530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54685396 54685518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54687526 54687726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54690004 54690234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54693057 54693240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54696269 54696397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 54703834 54703899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3894 nt):
ATGGCTTGGATGACTTACGTTTCCCATTGGTTTGAGCAAGATGATTGGTATGAAGGACTCCAAAGAGCAA
CCATGTCCCAGGTCAGGCAAGTGGGACTTCTGGCTGCTGGATGTCAACCATGGAACAAAGATGTATGTGC
TGCCAACGGAGATCGGTTTGCATACTGCGCAACTCTGGCCATCTACATATACCAGCTGGATCACCGTTAT
AATGAATTCAAACTTCATGCAATTATGTCGGAACATAAAAAAACAATCACGGCAATTTCCTGGTGTCCAC
ATAACCCTGACCTGTTTGCAAGCAGCAGTACCGATAACTTAGTGATCATTTGGAACGTGGCTGAGCAAAA
AGTCATTGCTAAACTCGACAACATCAAAGAGACACCTGCCTGCCTCGGCTGGTGCTGGAACACACATGAT
GCTGTGGCATTCGTTTCCCAGAAGGGTCCTCTGCTCATTTGGACCATCTCAGGGCCAGATAGTGGAGTGT
CTGTGCACAAAGAAGCCCATAGTTTTGCGTCTGACATTTGCATATTTAGGTGGCACACCCAAAAGAAAGG
AAAAGTTGCATTTGGTCACATTGATGGAAGCATATCGATTTTTCAGCCTGATGAGGAGGACCCTGTTACA
GCCCTGGAGTGGGACCCACTGTCCACAGATTATCTTCTGGTGGCTAATTTGCATTTTGGAATTCGTCTTC
TGGACTCTGAATCCCTTTACTGCATCACAACGTTTAATCTTCCCAGTGCTGCAGTGTCTGTGCAGTGCTT
GGCCTGGGTTCCCAGTGCTCCAGGCATGTTTATAACTGGAGATTCTCAAGTGGGCGTTTTACGCATTTGG
AATGTTTCAAGAACAACACCTATTGATAATTTTAAATTAAAGAAAACAGGATTTCACTGCTTTCATGTAG
TTAATTCTCCTCCAAAGAAAAAATTTTCCGTCCAGTCTCCAAACAAAAATCATTATATATCTTCAACAAG
TGAAGCAGTTCCACCCCCAAATTTGACACAGAATCAAGCATTTTCTCTTCCCCCTGGTCATGTCGTATGC
TGTTTCCTGGATGGTGGAGTTGGACTTTATGACATGGGAGCCAAGAAGTGGGATTTTCTTAGAGAACTGG
GACACGTGGAAACTATATTTGACTGCAAATTCAAACCTGATGATCCAAATGTTTTAGCAACAGCTTCATT
TGATGGCACTATAAAGGTGTGGGATATAAACACATTAACAGCAGTGTATACCTCTCCGGGTAACGAAGGG
GTCATTTTTGCTCTTTCTTGGGCTCCAGGTGATTTAAATTGCATTGCTGGTGCAACTTCCAGAAATGGCG
CTTTTATTTGGGATATTCAAAAGGGCAAAATAATACAGCGATTTAATGAGCATGGAAAAAATGGAATATT
CTATATTGCCTGGAGTCATAAAGATTCTAAACGAATAGCAACTTGCAGTGGCGATGGTTTTTGCATTATT
CGAACAGTCGATGGTAAACTACTGCACAAATACAAACACCCGGCTGCAGTGTTTGGCTGTGATTGGAGCC
AAAACAACAAAGACATGATAGCCACTGGCTGTGAAGACAAAAACATCCGTGTCTTTTATGTAGCCACGAG
CTCTAATCAGCCCTTGAAAGTGTTTAGCGGGCACACAGCAAGAGTGTTCCATGTTAAGTGGTCTCCTCTG
AGGGAAGGAATTCTCTGCAGTGGTTCTGATGATGGCTCTGTTCGAATCTGGGATTATACTCAAGATGCTT
GCGTAAGCACTCTTAATGGACACACTGCACCTGTGAGGGGGTTAATGTGGAATACTGAGATTCCATACCT
ACTAATCTCTGGAAGCTGGGACTATACTATCAAAGTGTGGGATACTCGAGGAGGAGTTTGCCTAGATACT
GTGTATGATCACGGTGCAGACGTTTATGGTTTAACTTGCCATCCAAGTCGTCCCTTCACGATGGCTTCCT
GCTCCCGAGATTCTACAGTGAGACTCTGGTCATTAATACCTTTAATCACCCCTTTACAAATAAATATTCT
GGCAGACAGATCTTGGGACGAAGTTATCGGAAACACTGATAATGCGATACGTCAAGACTGTCCTCCTCTC
CTCTGCGGCAAAGTGTCAAGAGACATTAAACAAGAAGTAGAAAAACTAACGTGCAACCCTCGGGCGAAAA
AGCTAAGACTGTTTTCAGAATGTTTATCACCTCCAGGTGGCAGTGACAACTTGTGGAACTTGGTGTCCGT
GATTAAAGGACAAGATGACAGCTTGCTCCCTCAGAACTACTGCAAAGGAATGATGCATTTGAAACACCTG
ATCAAATTTAGAACCTCAGAAGCCCAAGAACTAACGACAATCAAGATGTCTAAATTTGGTGGTGGTGTTG
GCGCACCTACTAAGGAGAAAAAACTGAAGGAAGCTGCTGAAATCCACCTGAGATTAGGACAAATACAGAG
ATACTGTGAACTCATGGTCGAACTTGGAGAGTGGGACAAAGCCCTATCAGTTGCACCTGGGGTCTCTGTG
AAATACTGGAGAAAGTTAATGCAGAGGAGAGCTGACCAGTTAATTCAGGAAGATAAGGATGATGTCATTC
CATACTGTATAGCCACTGGGGATGTGAAAAAGCTCGTCAATTTTTTTGTGTCCAGGGGTCAGCTTAAAGA
AGCACTGCTTGTTGCACAGGCTGCCTGTGAGGGAAATATGCAAAATGCCCATGTTTCTACACCAAAAGGA
GCTTCAAACTCTGATGATATCCACAAAGAAGACTTTAATGAACTCTTACACAAAGTCATAAATGAGCTGG
CCGAATGGTATTTTCAGGATGGCCAAGCTGTGTTGGCTGCGTGCTGCCATCTTGCTGTAGATGATATTGA
GCTTGCTATGGCATACCTGATCCGTGGGAATGAACTAGAGCTGGCGGTCTCAGTGGGCACTGTCCTAGGA
GAACCCGCAGCCCCAGCAATGCATTATGCCCTGCAGCTACTGGCGACAAAATGCATGATGATTCCAATGT
GCTTCCCATCTGTTGTATACAGGAACCTGGCAGCTGATCTTCTCCTGATGACTCCTGGTAGCGAAGTCCA
CTTAGTAAAACTCTGTGCCTTCTACCCTGGGTGCATCGAAGAAATCAATGACCTTCACAAGAAGTGCAAT
CTACCCCCTGCAGAAGAATGCACTCAGTTGGCTGAAACAGCCCGGGCAGATGGCAATGTATTTGAAACCA
TAAAGTATTATTTACTAAGTCAAGAACCTGAAAAGGCTCTTCCTATTGGTATTGACTTTGTCAAAGGATG
TATCAGTAACTCAAACTGGACTCTAGATACTGTTTACCCTGTGCTTGACCTGATGAGTTATATCCGTACT
GAAAAATTACTCTTACATACGTGCACTGAGGCTCGAAATGAATTGCTTATCTTATGTGGTTACATCGGTG
CCTTGCTGGCTATCAGGAGACAGTATCAAAGCATTGTTCCCTCGCTGTATGAGTACACGAGTCAGCTCTT
AAAACGACGAGTGGTGTCAGTACCATTAAAAATTGAGCATCTCTCTGAGGAGCTGGATGCATGGAGAGCT
TGCACACAATCGACCAAACAATCATCAGAAGATTCTCCATATACACCCCCTTCTGACTCACAAAGAACAG
TTTATGAAACTTTATTAAAGAGACTGAAAGAAGAGCCACTCAAAGGAATTACTGGACTAGATTACGTGAC
TGGATCAAATCTTCCAAGCCATTCAGACATTCACATCTCTTGTCTTACTGGACTAAAAATCCAGGGTCCT
GTGTATTTCCTAGAAGATGGAAAATCAACTATTTCTTTGAATGACGCTCTGATGTGGGCAAAGGTGAATC
CATTCTCACCTTTAGGAACTGGAATACGACTCAATCCATTTTGA

Translation (1297 aa):
MAWMTYVSHWFEQDDWYEGLQRATMSQVRQVGLLAAGCQPWNKDVCAANGDRFAYCATLAIYIYQLDHRY
NEFKLHAIMSEHKKTITAISWCPHNPDLFASSSTDNLVIIWNVAEQKVIAKLDNIKETPACLGWCWNTHD
AVAFVSQKGPLLIWTISGPDSGVSVHKEAHSFASDICIFRWHTQKKGKVAFGHIDGSISIFQPDEEDPVT
ALEWDPLSTDYLLVANLHFGIRLLDSESLYCITTFNLPSAAVSVQCLAWVPSAPGMFITGDSQVGVLRIW
NVSRTTPIDNFKLKKTGFHCFHVVNSPPKKKFSVQSPNKNHYISSTSEAVPPPNLTQNQAFSLPPGHVVC
CFLDGGVGLYDMGAKKWDFLRELGHVETIFDCKFKPDDPNVLATASFDGTIKVWDINTLTAVYTSPGNEG
VIFALSWAPGDLNCIAGATSRNGAFIWDIQKGKIIQRFNEHGKNGIFYIAWSHKDSKRIATCSGDGFCII
RTVDGKLLHKYKHPAAVFGCDWSQNNKDMIATGCEDKNIRVFYVATSSNQPLKVFSGHTARVFHVKWSPL
REGILCSGSDDGSVRIWDYTQDACVSTLNGHTAPVRGLMWNTEIPYLLISGSWDYTIKVWDTRGGVCLDT
VYDHGADVYGLTCHPSRPFTMASCSRDSTVRLWSLIPLITPLQINILADRSWDEVIGNTDNAIRQDCPPL
LCGKVSRDIKQEVEKLTCNPRAKKLRLFSECLSPPGGSDNLWNLVSVIKGQDDSLLPQNYCKGMMHLKHL
IKFRTSEAQELTTIKMSKFGGGVGAPTKEKKLKEAAEIHLRLGQIQRYCELMVELGEWDKALSVAPGVSV
KYWRKLMQRRADQLIQEDKDDVIPYCIATGDVKKLVNFFVSRGQLKEALLVAQAACEGNMQNAHVSTPKG
ASNSDDIHKEDFNELLHKVINELAEWYFQDGQAVLAACCHLAVDDIELAMAYLIRGNELELAVSVGTVLG
EPAAPAMHYALQLLATKCMMIPMCFPSVVYRNLAADLLLMTPGSEVHLVKLCAFYPGCIEEINDLHKKCN
LPPAEECTQLAETARADGNVFETIKYYLLSQEPEKALPIGIDFVKGCISNSNWTLDTVYPVLDLMSYIRT
EKLLLHTCTEARNELLILCGYIGALLAIRRQYQSIVPSLYEYTSQLLKRRVVSVPLKIEHLSEELDAWRA
CTQSTKQSSEDSPYTPPSDSQRTVYETLLKRLKEEPLKGITGLDYVTGSNLPSHSDIHISCLTGLKIQGP
VYFLEDGKSTISLNDALMWAKVNPFSPLGTGIRLNPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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