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Report for CCDS22314.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22314.1 Public Mus musculus 8 Fbxo8 23 108 98 CCDS HistoryNCBI Gene:50753Re-query CCDS DB by CCDS ID:22314.1Re-query CCDS DB by GeneID:50753See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22314.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040218.12 ENSMUSP00000037544.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040218.12Link to Ensembl Protein Viewer:ENSMUSP00000037544.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000040218Re-query CCDS DB by Protein ID:ENSMUSP00000037544
Original member Current member NCBI NM_015791.4 NP_056606.2 Accepted alive Link to Nucleotide Sequence:NM_015791.4Link to Protein Sequence:NP_056606.2Re-query CCDS DB by Nucleotide ID:NM_015791Re-query CCDS DB by Protein ID:NP_056606Link to BLAST:NP_056606.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056606.2 319 Q9QZN3 319 100% 0 0

Chromosomal Locations for CCDS 22314.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 56564566 56564894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 56569284 56569410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 56588007 56588125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 56590058 56590254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 56591436 56591623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGGGTCAAGGACTCTGGAGAGTGGCCAGAAACCATCATCTCCAACAGGAAGCCTACAGTGAGACAGGCT
ACCTCAGCAGAGAACAGAGCAGGAGAGTGGCTTCAAGCAACATTTCTCACACCAGCCACCGGAAACAAGC
CCAAGGAGGCATTGATATCTATCATCTTCTGAAGGCAAGGAAGTCTAAAGAACAGGAGGGGTTCATAAAC
TTGGAAATGCTGCCTCCTGAGCTGAGCTTCACCATCTTATCCTACCTGAATGCAACTGACCTTTGCTTAG
CTTCCTGTGTTTGGCAAGACCTCGCTAATGATGAACTTCTCTGGCAAGGGTTGTGTAAATCTACATGGGG
TCACTGCTCTATATACAATAAGAACCCACCTTTAGGATTTTCTTTTAGAAAATTGTATATGCAGCTAGAT
GAGGGAAGCCTCACCTTTAATGCCAACCCAGAGGAGGGAGTGAGCTACTTTATGTCCAAGGGTATCCTAG
ATGATTCGCCAAAGGAAATAGCAAAATTTATCTTCTGTACCAGAACACTAAATTGGAAAAAACTGAGAAT
CTATCTTGATGAAAGGAGAGATGTCTTGGATGACCTTGTAACCTTGCATAATTTTAGAAATCAGTTCTTG
CCGAATGCACTGAGAGAATTTTTTCGTCATATTCATGCCCCTGAAGAGCGTGGGGAGTACCTTGAAACTC
TTATAACCAAGTTCTCACATAGGTTCTGTGCTTGCAATCCTGACCTCATGCGAGAACTTGGCCTTAGTCC
TGATGCTGTCTATGTACTGTGCTACTCTTTGATTCTACTTTCCATTGACCTCACTAGTCCTCATGTGAAG
AATAAAATGTCAAAAAGAGAGTTTATTCGAAATACGCGCCGTGCTGCTCAGAACATTAGTGAAGATTTTG
TAGGACACCTTTATGACAACATCTACCTTATTGGCCATGTGGCTGCATAA

Translation (319 aa):
MGQGLWRVARNHHLQQEAYSETGYLSREQSRRVASSNISHTSHRKQAQGGIDIYHLLKARKSKEQEGFIN
LEMLPPELSFTILSYLNATDLCLASCVWQDLANDELLWQGLCKSTWGHCSIYNKNPPLGFSFRKLYMQLD
EGSLTFNANPEEGVSYFMSKGILDDSPKEIAKFIFCTRTLNWKKLRIYLDERRDVLDDLVTLHNFRNQFL
PNALREFFRHIHAPEERGEYLETLITKFSHRFCACNPDLMRELGLSPDAVYVLCYSLILLSIDLTSPHVK
NKMSKREFIRNTRRAAQNISEDFVGHLYDNIYLIGHVAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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