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Report for CCDS22323.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22323.1 Public Mus musculus 8 Clcn3 23 108 98 CCDS HistoryNCBI Gene:12725Re-query CCDS DB by CCDS ID:22323.1Re-query CCDS DB by GeneID:12725See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22323.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093490.8 ENSMUSP00000091202.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093490.8Link to Ensembl Protein Viewer:ENSMUSP00000091202.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000093490Re-query CCDS DB by Protein ID:ENSMUSP00000091202
Original member NCBI NM_007711.3 NP_031737.1 Updated not alive Link to Nucleotide Sequence:NM_007711.3Link to Protein Sequence:NP_031737.1Re-query CCDS DB by Nucleotide ID:NM_007711Re-query CCDS DB by Protein ID:NP_031737
Current member NCBI NM_007711.4 NP_031737.1 Accepted alive Link to Nucleotide Sequence:NM_007711.4Link to Protein Sequence:NP_031737.1Re-query CCDS DB by Nucleotide ID:NM_007711Re-query CCDS DB by Protein ID:NP_031737Link to BLAST:NP_031737.1

Chromosomal Locations for CCDS 22323.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 60913085 60913175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60919340 60919556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60922790 60923188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60927232 60927418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60929071 60929616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60930681 60930761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60933081 60933287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60934485 60934607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60937300 60937487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60938548 60938647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 60941257 60941400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2283 nt):
ATGACAAATGGAGGCAGCATTAATAGCTCTACACACTTGCTGGATCTTTTGGATGAGCCTATCCCAGGTG
TCGGTACCTACGATGATTTCCATACTATTGACTGGGTGCGAGAGAAGTGTAAGGACAGAGAAAGGCACAG
ACGGATCAACAGTAAAAAAAAAGAATCAGCATGGGAAATGACAAAAAGTCTGTATGACGCCTGGTCAGGA
TGGCTTGTTGTTACACTGACGGGACTGGCATCAGGGGCACTAGCTGGATTGATAGACATTGCTGCTGACT
GGATGACTGACCTGAAGGAGGGCATCTGCCTCAGTGCATTGTGGTACAACCATGAACAGTGTTGTTGGGG
CTCTAATGAGACAACGTTTGAAGAGAGGGATAAATGTCCACAGTGGAAAACATGGGCAGAGTTAATCATT
GGCCAAGCAGAGGGCCCTGGATCTTATATCATGAACTACATCATGTACATCTTTTGGGCTTTGAGTTTTG
CCTTTCTTGCAGTTTCTTTGGTGAAAGTATTTGCTCCATATGCCTGTGGCTCTGGAATTCCAGAGATTAA
AACTATTTTGAGTGGATTTATCATCAGAGGATACTTGGGAAAATGGACTTTAATGATTAAAACTATCACG
TTAGTGCTGGCTGTGGCATCAGGTTTGAGTTTAGGAAAAGAAGGTCCCCTGGTACATGTTGCCTGCTGCT
GTGGAAACATCTTTTCCTACCTCTTTCCAAAGTATAGCACCAATGAAGCTAAAAAGAGGGAGGTGCTGTC
AGCCGCCTCAGCTGCTGGGGTTTCTGTGGCTTTTGGTGCACCGATCGGAGGAGTTCTTTTTAGCTTGGAG
GAGGTTAGCTATTATTTTCCTCTCAAAACTTTATGGAGATCATTTTTTGCTGCTTTGGTGGCAGCATTTG
TTTTGAGATCCATCAATCCATTTGGTAACAGCCGTCTGGTCCTCTTTTATGTGGAGTATCATACACCATG
GTACCTTTTTGAACTGTTTCCTTTTATTCTCCTAGGGGTATTTGGAGGGCTTTGGGGAGCTTTTTTTATT
AGGGCAAATATTGCCTGGTGTCGTCGACGCAAGTCCACCAAATTTGGAAAGTATCCTGTTCTCGAAGTCA
TTATTGTTGCAGCCATTACTGCTGTGATAGCCTTCCCCAACCCATACACAAGGCTCAACACCAGTGAACT
GATTAAAGAGCTGTTTACAGATTGTGGGCCGTTGGAATCCTCCTCTCTCTGTGACTACAGAAATGACATG
AATGCCAGTAAAATTGTTGACGATATTCCTGACCGTCCAGCAGGCGTTGGAGTATATTCAGCTATCTGGC
AGTTGTGCCTAGCGCTCATATTTAAAATAATAATGACAGTATTCACTTTTGGTATCAAGGTCCCGTCAGG
CTTGTTTATCCCCAGCATGGCCATTGGAGCCATTGCAGGGAGAATTGTGGGGATCGCTGTGGAGCAGCTT
GCCTACTATCACCACGACTGGTTTATCTTCAAGGAGTGGTGTGAGGTTGGGGCTGACTGCATCACTCCCG
GGCTGTATGCCATGGTTGGGGCTGCTGCGTGCTTAGGTGGTGTGACAAGAATGACTGTGTCTCTGGTGGT
TATTGTTTTTGAACTTACTGGAGGCTTGGAATATATTGTTCCTCTTATGGCTGCAGTAATGACCAGTAAA
TGGGTTGGTGATGCCTTTGGTAGGGAAGGTATTTATGAAGCACACATCCGACTAAATGGGTACCCTTTCT
TGGATGCAAAAGAAGAATTCACTCATACAACCCTGGCTGCTGATGTTATGAGACCTCGAAGAAGTGACCC
TCCCTTAGCTGTTTTGACACAGGACAATATGACAGTAGATGACATAGAAAACATGATTAATGAAACCAGC
TATAATGGCTTTCCTGTTATAATGTCAAAAGAATCTCAGAGATTAGTGGGATTTGCCCTCAGAAGAGACC
TGACTATTGCAATAGAAAGTGCCAGAAAAAAACAAGAAGGGATTGTTGGCAGTTCTCGGGTGTGTTTTGC
ACAGCATACTCCATCTCTTCCAGCAGAAAGTCCACGGCCATTAAAACTGAGAAGCATCCTTGACATGAGC
CCTTTTACAGTGACAGACCACACCCCAATGGAGATTGTGGTAGACATCTTTCGAAAGCTTGGTCTGAGGC
AGTGCCTTGTAACTCACAACGGACGCCTCCTTGGCATTATAACAAAAAAAGATATCCTCCGTCATATGGC
CCAGACGGCAAACCAAGACCCCGCTTCAATAATGTTCAACTGA

Translation (760 aa):
MTNGGSINSSTHLLDLLDEPIPGVGTYDDFHTIDWVREKCKDRERHRRINSKKKESAWEMTKSLYDAWSG
WLVVTLTGLASGALAGLIDIAADWMTDLKEGICLSALWYNHEQCCWGSNETTFEERDKCPQWKTWAELII
GQAEGPGSYIMNYIMYIFWALSFAFLAVSLVKVFAPYACGSGIPEIKTILSGFIIRGYLGKWTLMIKTIT
LVLAVASGLSLGKEGPLVHVACCCGNIFSYLFPKYSTNEAKKREVLSAASAAGVSVAFGAPIGGVLFSLE
EVSYYFPLKTLWRSFFAALVAAFVLRSINPFGNSRLVLFYVEYHTPWYLFELFPFILLGVFGGLWGAFFI
RANIAWCRRRKSTKFGKYPVLEVIIVAAITAVIAFPNPYTRLNTSELIKELFTDCGPLESSSLCDYRNDM
NASKIVDDIPDRPAGVGVYSAIWQLCLALIFKIIMTVFTFGIKVPSGLFIPSMAIGAIAGRIVGIAVEQL
AYYHHDWFIFKEWCEVGADCITPGLYAMVGAAACLGGVTRMTVSLVVIVFELTGGLEYIVPLMAAVMTSK
WVGDAFGREGIYEAHIRLNGYPFLDAKEEFTHTTLAADVMRPRRSDPPLAVLTQDNMTVDDIENMINETS
YNGFPVIMSKESQRLVGFALRRDLTIAIESARKKQEGIVGSSRVCFAQHTPSLPAESPRPLKLRSILDMS
PFTVTDHTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDILRHMAQTANQDPASIMFN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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