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Report for CCDS22355.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22355.1 Public Mus musculus 8 Gatad2a 23 108 98 CCDS HistoryNCBI Gene:234366Re-query CCDS DB by CCDS ID:22355.1Re-query CCDS DB by GeneID:234366See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22355.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065169.11 ENSMUSP00000070229.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065169.11Link to Ensembl Protein Viewer:ENSMUSP00000070229.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000065169Re-query CCDS DB by Protein ID:ENSMUSP00000070229
Original member Current member NCBI NM_145596.4 NP_663571.2 Accepted alive Link to Nucleotide Sequence:NM_145596.4Link to Protein Sequence:NP_663571.2Re-query CCDS DB by Nucleotide ID:NM_145596Re-query CCDS DB by Protein ID:NP_663571Link to BLAST:NP_663571.2

Chromosomal Locations for CCDS 22355.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 69909844 69909974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69911677 69911869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69912164 69912238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69912923 69913224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69914519 69914798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69916284 69916451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69916569 69916700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69917443 69917532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69917723 69917854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69917946 69918078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69935779 69936035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1893 nt):
ATGAGTGAAGAAGCATGCCGAACCCGCAGTCAGAAGCGCACCCTTGAACCTGACCTAACGGAGGATGATG
TGGAGAACAAGAAAATGAAAATGGAGAAAGGGTCATCAGAGCTGACAGTGGACGGAGACAGCAGGGTGAT
GCCAGAGCCGAGTGCAGGCTCAGCCCAGGGGTTGCTGAGGACAACAGAGGCCATGGGCACAGGATCTGGC
GAGGGGCTGTTAGGAGACGGGCCTGTGGACATGCGCACTTCACACAGTGACATGAAGTCTGAGAAGAGAC
CTCCCTCGCCTGATGTGATTGTGCTCTCTGACAGTGAGCAGCCATCGAGCCCAAGGGTGAATGGCCTGAC
CACAGTAGCCTTGAAAGACACCAGCACTGAGGCGCTCTTGAAAAGCAGCCCAGAAGAACGAGAGCGGATG
ATCAAGCAGCTGAAGGAGGAGCTGAGGCTAGAGGAAGCAAAACTGGTCTTGTTGAAGAAGCTGCGGCAGA
GTCAGATACAGAAGGAAGCCACCGCACAGAAGCCTACAGCTTCCTCAGGGAGCACTGTGACCACCCCTCC
CCCACTCGTGCGGGGTACCCAGAACATTCCTGCTGGCAAGACCTCACTTCAGACCTCCTCCACTCGAATA
CCCGGCAGCATCATCCCACCACCACTGGTCCGAGGTGGGCAGCAGGTGTCTGCCAAACTGGGACCACAGG
CCAGCTCTCAAGTAGTCATGCCACCGCTTGTCAGGGGGGCCCAGCAGATTCACAACATCAGACAGCATTC
CTCTACGGGGCCACCACCCCTCCTCCTGGCCCCCCGTGCCTCAGTGCCCAGCATGCAGATTCAGGGACAG
AGGATCATCCAGCAGGGACTTATCCGTGTCGCCAATGTCCCCAACACCAGTCTGCTTGTCAACATCCCTC
AGCCTACTGCAGCCTCCATGAAGGGGACAGCAGTTGCTTCTGCTCAGGCAAATTCCACTCCCACCAGTGT
GGCTTCTGTGGTTGCATCTGCTGAGTCTCCAGCTAGCCGACAGGCGGCTGCCAAGCTAGCACTGCGCAAG
CAGCTGGAGAAGACACTGCTGGAGATCCCCCCACCCAAGCCCCCTGCCCCAGAGATGAACTTCTTGCCCA
GTGCTGCCAATAATGAGTTTATCTACCTGGTCGGCCTGGAGGAGGTGGTGCAGAACCTGCTGGAGACACA
AGCAGGCAGGATTTCTGCCACTGCAGCAGCTGCTGTGTTATCCCGGGAGCCCTACATGTGTGTGCAGTGT
AAGACAGACTTCACATGCCGCTGGCGAGAGAAGGGTGGAGCCGTTATGTGTGAGAACTGCATGACATCCA
ACCAAAAGAAGGCACTCAAGGTGGAGCACACCAGTCGCCTGAAGGCCGCCTTTGTGAAGGCTCTACAGCA
AGAGCAGGAGATGGAGCAGCGCCTGCTGCAGCAGGGTGTGGGTACTGCCAGCATCAAGGCTGAGCCTGCA
GCTCCACATCCCACGCTGAAGCAGGTCATAAAGCCCCGACGTAAGTTGGCGTTCCGCTCAGGAGAGGCCC
GTGTCTGGAATAACGGGTCCTCACTACAGGCTTCCAGCCAGCTGTCCCGAGGCTCAGCCACAGCACCTCG
TGGTGTTCTGCACACTTTCAGCCAGTCACCCAAACTGCAGAATGCAGCCTCAGCTACGGCCCTGGTAAGC
AGGACTGGCAGACATTCCGAGAGAGTCGTGGGCACCGGCAAGGGCACCGCCTCCAACTGGAAAAAGACGC
CTCTGAGCACAGGTGGGACCCTCGCCTTCGTCAGCCCAAGCTTGGCAGTACACAAGACCTCCTCGGCTGT
GGATCGACAGCGAGAATACCTCCTGGACATGATTCCTCCACGCTCCATCCCCCAATCAGCCACATGGAAA
TAG

Translation (630 aa):
MSEEACRTRSQKRTLEPDLTEDDVENKKMKMEKGSSELTVDGDSRVMPEPSAGSAQGLLRTTEAMGTGSG
EGLLGDGPVDMRTSHSDMKSEKRPPSPDVIVLSDSEQPSSPRVNGLTTVALKDTSTEALLKSSPEERERM
IKQLKEELRLEEAKLVLLKKLRQSQIQKEATAQKPTASSGSTVTTPPPLVRGTQNIPAGKTSLQTSSTRI
PGSIIPPPLVRGGQQVSAKLGPQASSQVVMPPLVRGAQQIHNIRQHSSTGPPPLLLAPRASVPSMQIQGQ
RIIQQGLIRVANVPNTSLLVNIPQPTAASMKGTAVASAQANSTPTSVASVVASAESPASRQAAAKLALRK
QLEKTLLEIPPPKPPAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQAGRISATAAAAVLSREPYMCVQC
KTDFTCRWREKGGAVMCENCMTSNQKKALKVEHTSRLKAAFVKALQQEQEMEQRLLQQGVGTASIKAEPA
APHPTLKQVIKPRRKLAFRSGEARVWNNGSSLQASSQLSRGSATAPRGVLHTFSQSPKLQNAASATALVS
RTGRHSERVVGTGKGTASNWKKTPLSTGGTLAFVSPSLAVHKTSSAVDRQREYLLDMIPPRSIPQSATWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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