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Report for CCDS22460.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
22460.1 |
Public |
Mus musculus |
8 |
Ddx39a |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:68278](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:22460.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:68278](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 8 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 22460.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000019576.14 |
ENSMUSP00000019576.8 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000019576.14](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000019576.8](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000019576](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000019576](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000109810.1 |
ENSMUSP00000105435.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000109810.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000105435.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000109810](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000105435](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000172396.7 |
ENSMUSP00000132222.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000172396.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000132222.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000172396](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000132222](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000212949.1 |
ENSMUSP00000148329.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000212949.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000148329.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000212949](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000148329](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001363116.1 |
NP_001350045.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001363116.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001350045.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001363116](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001350045](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001350045.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_197982.3 |
NP_932099.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_197982.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_932099.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_197982](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_932099](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_932099.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 22460.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1284 nt): ATGGCAGAACAGGATGTGGAAAATGAACTTTTGGATTATGATGAAGATGAAGAGCCCCAGGCACCCCAGG AGAGCACTCCAGCTCCCCCGAAGAAAGATGTCAAAGGATCTTATGTCTCCATCCACAGTTCTGGCTTCCG GGACTTTCTACTGAAGCCAGAGCTCCTGAGAGCTATAGTTGACTGTGGCTTTGAGCATCCTTCAGAGGTC CAGCATGAGTGTATTCCCCAGGCCATTCTGGGTATGGATGTCCTGTGCCAGGCCAAGTCTGGGATGGGCA AGACAGCTGTGTTTGTGCTGGCCACCCTGCAGCAGATTGAGCCTGTCAATGGCCAGGTATCAGTCCTGGT CATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAGTATGAGCGCTTCTCTAAGTACATGCCC AGTGTTAAGGTTTCTGTGTTCTTTGGAGGCCTCTCCATTAAGAAGGATGAAGATGTGTTGAAGAAGAACT GTCCTCATGTTGTGGTGGGGACACCAGGCCGGATCCTGGCACTTGTGCGGAGCAGGAGCCTCAACCTGAG GAATGTGAAGCACTTTGTGCTAGATGAATGTGACAAGATGCTGGAACAGCTGGACATGCGCCGGGATGTA CAGGAGATCTTTCGTCTGACACCCCACGAGAAGCAGTGTATGATGTTCAGCGCCACCCTGAGCAAGGAGA TCCGGCCAGTCTGCAGGAAGTTCATGCAGGATCCTATGGAGGTGTTTGTGGACGACGAGACCAAGCTCAC ACTGCATGGGCTGCAGCAGTATTACGTCAAGCTCAAGGACAGTGAGAAGAACCGTAAGCTCTTCGACCTC CTCGACGTGCTAGAGTTTAACCAGGTGGTGATCTTTGTCAAGTCTGTGCAACGCTGCATGGCCCTGGCCC AGCTCCTAGTGGAGCAGAATTTCCCAGCTATCGCTATTCACCGAGGCATGGCCCAGGAGGAGCGCCTGTC CCGATACCAGCAGTTCAAGGACTTCCAGCGACGAATCCTGGTGGCTACTAATCTGTTTGGCAGAGGTATG GACATTGAGCGAGTCAACATTGTCTTCAACTATGACATGCCAGAGGACTCAGACACCTACCTTCACCGAG TGGCTCGTGCTGGTCGCTTTGGTACCAAGGGCCTGGCAGTCACTTTTGTATCGGATGAAAATGATGCCAA AATCCTTAATGATGTTCAGGACCGGTTTGAAGTGAATGTAGCTGAGCTTCCAGAGGAAATAGATATCTCC ACATACATTGAGCAGAGCCGGTAA
Translation (427 aa): MAEQDVENELLDYDEDEEPQAPQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEV QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRELAFQISKEYERFSKYMP SVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDV QEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL LDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGM DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDIS TYIEQSR
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