NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22551.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22551.1 Public Mus musculus 8 Ccdc102a 23 108 98 CCDS HistoryNCBI Gene:234582Re-query CCDS DB by CCDS ID:22551.1Re-query CCDS DB by GeneID:234582See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22551.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077955.5 ENSMUSP00000077107.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077955.5Link to Ensembl Protein Viewer:ENSMUSP00000077107.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000077955Re-query CCDS DB by Protein ID:ENSMUSP00000077107
Original member Current member NCBI NM_001033533.3 NP_001028705.2 Accepted alive Link to Nucleotide Sequence:NM_001033533.3Link to Protein Sequence:NP_001028705.2Re-query CCDS DB by Nucleotide ID:NM_001033533Re-query CCDS DB by Protein ID:NP_001028705Link to BLAST:NP_001028705.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028705.2 549 Q3TMW1 549 100% 0 0

Chromosomal Locations for CCDS 22551.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 94903262 94903391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94905257 94905360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94905932 94906102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94907715 94907924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94908274 94908390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94909744 94909852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94911428 94911654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94913083 94913664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1650 nt):
ATGAGCCACGGTCCGAGCCCGCGGCTGGCTGAGTCTCCGCAGCTGTCCAAGAGCAGCCTGCTCACCATCC
TGGGCAGCCCGTCCCCGGAGCGCATGGGCCCGGCCGACTCGCTGCCACCCACGCCGCCTAGCGGCACCCC
GTCACCAGGACCGCCACCCTCACTACCCTTGACTGCTCCCGCTCTGCTGGCCGACGGCGACTGGGAGAGC
CGCGAGGAGCTGCGGCTGCGGGAGCTGGAGGAGGCGCGCGCGCGAGCCTTGCAGATGGAGAAAACAATGC
GCTGGTGGTCGGACTGCACGGCGAACTGGCGCGAGAAGTGGAGCAAGGTGCGCGCCGAGCGCAACCGTGC
GCGGGAAGAGGTGCGCCAGCTGCGCCAGCGCCTGGATACGCTCACCAAGGAGTTGGCGGGCGCGCGCCGT
GAGCGCCAGGAGGCTCAGGGCGAGTGCGAGGCGCGCGGCCGCGAGCTGGCCCGGCTGCGGGGAGTGCACA
GTGCGGCCGACAAGACTCACGACGGTCCGGAGCCCGAACGCGAGCAGGAGCCGGTGCGCGACATCGGGGC
GGAAAGGCCGCCTGGCAGCCAGGAGCTGGACCTGGTAGAGAGCCTGCTGAAGAGCAGACCAGAGGAGCCT
GAGGGCTGCTGGGATGCCTGCAGTGTAGCAGCAGGGGGCCCTCGGGTCAGCTCAGGACGCCAGGATCGCA
ACCGCCTGCCCTGGGAGGACACAGCCAGTACAGAAGAGGATGCCTCCAAGTTGACTGCTCTGCGCCTACG
GCTAGATGAGTCCCAGAAAGTGCTCCTCAAGGAGCGAGAGGATAAGCTGGCTCTGAGCAAAAACATCGAG
AAGCTGGAGGGGGAGCTTAGCCAATGGAAGATCAAATACGAGGAGTTGAGCAAGACCAAGCAGGAGATGC
TCAAACAACTCAGCATCCTAAAGGAGACGCACCAGGATGAGTTGGGCCGCATGTCGGAAGACCTGGAGGA
TGAGCTGGGCGCACGCTCTAGCATGGATCGCAAGATGGCTGAGCTGAGGGGTGAGATGGAAAGGCTCCAG
GCAGAGAATGCGGCCGAGTGGGGCCGCAGAGAGCGGCTGGAGACAGAGAAGCTGGGCCTGGAACGGGAGA
ACAAGAAGCTGCGCGCACAGGTTGGAGACCTGGAGGAGGCTCTGGCCCGCAGACGGCGGCAGAATGCCAG
TGCCCTGGACTGTGACCTGAGGGCCAGCCAGGCTGCTCTTTTCGAGAAGAACAAGGAACTGGCAGATCTG
AAGCACGTGCACGGCAAACTCAAGAAGCAGTTTCAAGAGAAGGTGGCCGAGCTGGCACACGCCAATCGGC
GCGTGGAGCAGCACGAGACGGAGGTCAAGAAGCTGCGGCTGCGGGTGGAAGAGCTCAAGAAAGAGCTGGC
CCAGGCAGAGGATGAGCTGGACGAGGCCCACAACCAGGCACGGAAGCTGCAACGGTCCCTGGACGAGCAG
ACAGAACAGAGCGAGAACCTACAGGTGCAGCTGGAACACCTGCAGTCCAGGCTCCGCAGGCAGCAGCAAA
ACGCACCCCTTTTTGGGAAGATTCGTAGTACCCGATTTGGCACCGAGGAAGCCGGAGACGGAGCCAGCGA
CCTGGATGAGGATGAGGACCTGCAAATCCAGGTGGCCTAG

Translation (549 aa):
MSHGPSPRLAESPQLSKSSLLTILGSPSPERMGPADSLPPTPPSGTPSPGPPPSLPLTAPALLADGDWES
REELRLRELEEARARALQMEKTMRWWSDCTANWREKWSKVRAERNRAREEVRQLRQRLDTLTKELAGARR
ERQEAQGECEARGRELARLRGVHSAADKTHDGPEPEREQEPVRDIGAERPPGSQELDLVESLLKSRPEEP
EGCWDACSVAAGGPRVSSGRQDRNRLPWEDTASTEEDASKLTALRLRLDESQKVLLKEREDKLALSKNIE
KLEGELSQWKIKYEELSKTKQEMLKQLSILKETHQDELGRMSEDLEDELGARSSMDRKMAELRGEMERLQ
AENAAEWGRRERLETEKLGLERENKKLRAQVGDLEEALARRRRQNASALDCDLRASQAALFEKNKELADL
KHVHGKLKKQFQEKVAELAHANRRVEQHETEVKKLRLRVEELKKELAQAEDELDEAHNQARKLQRSLDEQ
TEQSENLQVQLEHLQSRLRRQQQNAPLFGKIRSTRFGTEEAGDGASDLDEDEDLQIQVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH