NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22555.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22555.1 Public Mus musculus 8 Katnb1 23 108 98 CCDS HistoryNCBI Gene:74187Re-query CCDS DB by CCDS ID:22555.1Re-query CCDS DB by GeneID:74187See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22555.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034239.8 ENSMUSP00000034239.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034239.8Link to Ensembl Protein Viewer:ENSMUSP00000034239.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034239Re-query CCDS DB by Protein ID:ENSMUSP00000034239
Original member Current member NCBI NM_028805.2 NP_083081.2 Accepted alive Link to Nucleotide Sequence:NM_028805.2Link to Protein Sequence:NP_083081.2Re-query CCDS DB by Nucleotide ID:NM_028805Re-query CCDS DB by Protein ID:NP_083081Link to BLAST:NP_083081.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083081.2 658 Q8BG40 658 100% 0 0

Chromosomal Locations for CCDS 22555.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 95082854 95082893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95087288 95087418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95089960 95090077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95093516 95093616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95093914 95093955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95094480 95094563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95094720 95094835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95095173 95095244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95095352 95095502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95095606 95095796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95095889 95096019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95096356 95096406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95097212 95097288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95097399 95097518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95097615 95097764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95097955 95098031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95098106 95098180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95098319 95098435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95098654 95098786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1977 nt):
ATGGCCACCCCTGTGGTCACCAAGACAGCCTGGAAGTTGCAAGAGATCGTCGCCCATGCCAGCAATGTGT
CCTCCTTGGTGCTGGGCAAGGCCTCAGGGCGGCTGCTGGCCACTGGTGGGGATGACTGCCGAGTCAACCT
GTGGTCCATAAACAAGCCTAACTGCATCATGAGCCTGACAGGTCACACGTCCCCTGTGGAGAGTGTCCGT
CTCAACACTCCTGAGGAGCTCATCGTAGCTGGTTCCCAGTCGGGCTCCATCCGCGTCTGGGACCTGGAAG
CTGCTAAAATTCTTCGAACACTCATGGGCCACAAAGCCAACATCTGCAGCCTGGATTTCCACCCCTATGG
TGAATTTGTGGCCTCAGGCTCCCAGGACACAAACATTAAGCTCTGGGACATCAGGAGGAAAGGCTGTGTC
TTCCGATATAGGGGGCACAGCCAGGCTGTGCGGTGTCTCCGGTTCAGCCCTGATGGGAAGTGGCTGGCGT
CGGCAGCAGATGACCACACAGTGAAGCTTTGGGATCTGACGGCTGGCAAGATGATGTCCGAGTTCCCGGG
TCATACAGGGCCTGTCAATGTGGTGGAGTTTCACCCCAATGAATATCTCCTAGCTTCTGGCAGCTCCGAC
AGGACAATCCGCTTCTGGGACCTGGAGAAGTTCCAGGTGGTGAGCTGCATTGAAGGGGAGCCCGGGCCCG
TCAGGAGTGTCCTCTTCAACCCCGACGGCTGCTGCTTGTACAGCGGCTGCCAGGACTCGCTGCGTGTCTA
CGGCTGGGAACCTGAGCGCTGCTTTGATGTGGTCCTTGTCAACTGGGGCAAGGTGGCTGACCTGGCCATC
TGCAATGACCAGCTGATAGGTGTGGCTTTCTCCCAGAGTAATGTCTCCTCTTATGTGGTGGACCTGACGA
GAGTCACCAGGACGGGAACTGTGACCCAGGACCCTGTGCAGGCTAACCAGCCTCTGACACAACAGACCCC
TAACCCTGGTGTCTCCCTCCGCCGCATCTATGAGCGGCCCAGCACGACATGCAGCAAGCCTCAGAGGGTA
AAGCACAACTCAGAGAGCGAGCGGCGCAGCCCCAGCAGCGAAGATGACAGGGACGAGCGAGAGTCCCGGG
CGGAGATCCAGAACGCGGAGGACTACAATGAGATTTTCCAGCCCAAGAACAGCATCAGTCGGACACCACC
CCGGAGAAGTGAGCCCTTCCCAGCACCCCCAGAAGATGATGCAGCCACAGTGAAGGAGGTCTCAAAACCC
AGCCCAGCCATGGATGTGCAGTTGCCGCAGTTGCCGGTGCCAAATCTCGAGGTCCCAGCACGACCGTCAG
TCATGACTTCCACTCCTGCACCCAAGGGTGAACCTGACATCATCCCTGCCACACGGAATGAGCCCATTGG
CTTAAAGGCCTCGGACTTCTTGCCCGCCGTGAAGGTCCCCCAGCAGGCAGAGCTGGTGGACGAGGATGCC
ATGTCGCAGATACGCAAAGGCCACGACACCATGTTTGTGGTGCTCACCAGCCGCCACAAGAACCTGGACA
CTGTCCGAGCTGTATGGACTACAGGAGATATCAAGACATCAGTGGACTCTGCAGTGGCCATCAATGACCT
GTCTGTGGTAGTGGACCTCCTGAACATTGTCAATCAGAAAGCCTCCCTGTGGAAGCTGGACCTGTGCACC
ACAGTGCTGCCCCAGATCGAGAAACTGCTGCAGAGCAAGTATGAGAGCTATGTCCAGACCGGGTGCACCT
CCCTGAAGCTGATCCTGCAGCGGTTCCTACCCCTCATCACTGACATTTTGGCAGCCCCGCCCTCTGTGGG
TGTGGACATCAGCCGAGAGGAGAGGTTGCACAAGTGTCGACTCTGCTTCAAACAACTCAAGAGCATCAGT
GGCCTCGTCAAGAGCAAGTCGGGTTTGAGTGGCCGCCATGGCAGTGCCTTCCGTGAGCTGCACCTACTCA
TGGCCAGTTTGGACTGA

Translation (658 aa):
MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVR
LNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCV
FRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSD
RTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWGKVADLAI
CNDQLIGVAFSQSNVSSYVVDLTRVTRTGTVTQDPVQANQPLTQQTPNPGVSLRRIYERPSTTCSKPQRV
KHNSESERRSPSSEDDRDERESRAEIQNAEDYNEIFQPKNSISRTPPRRSEPFPAPPEDDAATVKEVSKP
SPAMDVQLPQLPVPNLEVPARPSVMTSTPAPKGEPDIIPATRNEPIGLKASDFLPAVKVPQQAELVDEDA
MSQIRKGHDTMFVVLTSRHKNLDTVRAVWTTGDIKTSVDSAVAINDLSVVVDLLNIVNQKASLWKLDLCT
TVLPQIEKLLQSKYESYVQTGCTSLKLILQRFLPLITDILAAPPSVGVDISREERLHKCRLCFKQLKSIS
GLVKSKSGLSGRHGSAFRELHLLMASLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH