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Report for CCDS22557.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22557.1 Public Mus musculus 8 Spmip8 23 108 98 CCDS HistoryNCBI Gene:73407Re-query CCDS DB by CCDS ID:22557.1Re-query CCDS DB by GeneID:73407See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22557.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161029.8 ENSMUSP00000125362.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161029.8Link to Ensembl Protein Viewer:ENSMUSP00000125362.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161029Re-query CCDS DB by Protein ID:ENSMUSP00000125362
Original member Current member NCBI NM_199455.2 NP_955534.1 Accepted alive Link to Nucleotide Sequence:NM_199455.2Link to Protein Sequence:NP_955534.1Re-query CCDS DB by Nucleotide ID:NM_199455Re-query CCDS DB by Protein ID:NP_955534Link to BLAST:NP_955534.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_955534.1 216 Q6IMH0-1 216 100% 0 0

Chromosomal Locations for CCDS 22557.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 95312957 95313179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95319676 95319737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95319986 95320160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95320482 95320543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95320650 95320714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95320906 95320938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 95321160 95321190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGGCCCAAATCATAGACCTGGTGCCCTGGGACGAATGCTCCGCCCACTTGTATGCTTCCCCAGCGGTCC
TCCTCCCCCTGGAGCGAGTGCGCCACCCACTGGCCGGTGTGAAGCACCAGCTCTACCACCCGGCCTTGCC
TTCCCTTCGGCGCATGGATATGGACACTGTCAAGGGTTGCCTCTCCGATGAACACTGCCAGTCTTCCACC
TACTTCTCCAAAGATGATTTCAACAAGGCCCACTTCACACTCCTAGGGGTCCCCAACAAACCCCTGCAAT
GCCTGGATTTCACAGCAACCGGCCAGAAGCTCTGTCACAAGTATCGTGGCGGCAAGATGATTCCCATCGC
GCCAGGCATCAACCGGGTCGACTGGCCCTGCTTCACGCGTGCCATCGAAGATTGGTCTAAATTCGTGTCC
AGGTCCGAAGAGTTCAAGCTGCCTTGTGCCAACAAAAGGGTGGAGGGTTTCAGTGGCTACGCGGTGCGGT
ACTTGAAGCCGGAGGTGACCCAGAACTGGCGGTACTGCCTCAACCAGAACCCCAGCCTGGACCGCTACGG
ACAGAAGCCCCTGCCTTTCGACTCGCTGAACGCGTTCAGGCGCTTTGGCTCCCACTACAGTCGCATCAAC
TATCTGACTCCCTGGCATTAA

Translation (216 aa):
MAQIIDLVPWDECSAHLYASPAVLLPLERVRHPLAGVKHQLYHPALPSLRRMDMDTVKGCLSDEHCQSST
YFSKDDFNKAHFTLLGVPNKPLQCLDFTATGQKLCHKYRGGKMIPIAPGINRVDWPCFTRAIEDWSKFVS
RSEEFKLPCANKRVEGFSGYAVRYLKPEVTQNWRYCLNQNPSLDRYGQKPLPFDSLNAFRRFGSHYSRIN
YLTPWH


Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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