NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, June 4, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22559.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22559.1 Public Mus musculus 8 Zfp319 23 108 98 CCDS HistoryNCBI Gene:79233Re-query CCDS DB by CCDS ID:22559.1Re-query CCDS DB by GeneID:79233See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22559.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057717.7 ENSMUSP00000053397.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057717.7Link to Ensembl Protein Viewer:ENSMUSP00000053397.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000057717Re-query CCDS DB by Protein ID:ENSMUSP00000053397
Original member Current member NCBI NM_024467.4 NP_077787.3 Accepted alive Link to Nucleotide Sequence:NM_024467.4Link to Protein Sequence:NP_077787.3Re-query CCDS DB by Nucleotide ID:NM_024467Re-query CCDS DB by Protein ID:NP_077787Link to BLAST:NP_077787.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077787.3 581 Q9ERR8 581 100% 0 0

Chromosomal Locations for CCDS 22559.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 95327828 95329573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1746 nt):
ATGTCAGAAAGCTGGCAGCAGCCACCGCAGACTCAGCCACAGCAGCCACAGGCGCCGCAGCCTCAGCACC
ATGCAGAGACACCTCCAGCCCTGGCTGAGCACACGCTGCCCCCAGGCTCGGCCGAGAACCCCCTGGGCTG
TGCCGTGTACGGCATACTCCTGCAACCCGACCCAGGCCTCCAGCCCCCACAGCATGCACCCCTGCAAGCC
GGGGAGCCGGGCCCCAAATGTGGCGTGTGTGGCCATGATCTGGCACACCTGTCCAGTCCGCATGAGCACC
AGTGCCTGGCAGGCCACGACCGCTCATTCCAGTGCACACAGTGTCTTAAGATCTTCCATCAGGCCACCGA
CCTGCTGGAGCACCAGTGTGTGCAGGCCGAGCAGAAGCCTTTTGTCTGCGGTGTTTGCAAAATGGGCTTC
TCCCTGCTCACCTCACTGGCCCAACACCACAGCTCCCACACCGGCATGGTCAAGTGCTCCATTTGTGATA
AGACCTACAAGCCAGCTGAGGCTGCGGAGCCGGCCACCACCACCGCCCCATCACTGCCCTCAGCACCTCC
ACCTGCTAACATAGCCCCTGTGGAGCAACCGGAAAAGCCCTATAGCTGCCCCGTTTGCCAGAAGCCCTTC
AAGCACCTGTCGGAGCTCTCCCGGCATGAGCGGATCCACACCGGAGAGAAGCCGTATAAGTGCACGCTGT
GTGACAAGAGCTTCAGCCAGTCCTCGCACCTCGTGCACCACAAGCGCACACACAGCTCGGAGCGGCCCTA
CAAGTGCGCTGTCTGCGAGAAGACCTTTAAGCACCGCTCGCATCTGGTGCGCCACATGTACGCGCATTCT
GGCGAGCATCACCTCTTCCGCTGCAACGTGTGCGAGCTGCATTTCAAAGAGTCGTCCGAGCTGCTGCAGC
ACCCCTGTACCCCGAGCGGCGAGCGGCCCTTCCGCTGCGGCGAGTGCCAGAAGGCCTTCAAGCGGCCGTC
GGACCTGCGGCAGCATGAGCGCACGCACAGTGCGGAGAGGCCCTTCAAGTGTGATCTGTGCCCCATGGGC
TTCAAACAGCAGTACGCACTGATGCGCCACCGGCGCACACACAAGACGGAAGAACCCTTTAAGTGCGGCC
TGTGCGAGAAGGGCTTCGGCCAGCCCAGCCACCTGCTCTACCACCAGCACGTGCACACCCTGGAGACTCT
GTTCAAGTGCCCGGTGTGCCAGAAGGGCTTCGACCAGTCGGCCGAGCTGCTGCGGCACAAGTGCCTGCCA
ACCTCCACCGAGCGGCCCTTCAAGTGCCCCGTGTGTAACAAGGCCTACAAGCGGGCATCCGCTCTGCAGA
AGCACCAGCTGTCCCACTGCGCTGCCGCCGAGAAGCCTCTGCGGTGCACCCTGTGCGAGCGCCGCTTTTT
TTCTTCCTCGGAGTTCGTGCAGCACCGCTGTGACCCGGCCCGGGAGAAGCCGCTCAAGTGTCCGGACTGC
GAGAAGCGCTTCAAGTATGCCTCAGACCTGCAACGCCACCGGCGGGTGCACACGGGCGAGAAGCCCTACA
AGTGCCCTAGCTGCGATAAAGCCTTCAAGCAGCGAGAGCATCTCAACAAGCACCAGGGCGTGCATGCCCG
AGAGCAGCAGTTCAAGTGTGTGTGGTGCGGCGAACGCTTTCTGGATGTGGCGCTGCTACAGGAGCACAGT
GCCCAGCACAGTGCTGCCGCCGCAGCCGCGGAGGGCGCCTACCAGGTGGCAGCCTGCTTGCCCTAA

Translation (581 aa):
MSESWQQPPQTQPQQPQAPQPQHHAETPPALAEHTLPPGSAENPLGCAVYGILLQPDPGLQPPQHAPLQA
GEPGPKCGVCGHDLAHLSSPHEHQCLAGHDRSFQCTQCLKIFHQATDLLEHQCVQAEQKPFVCGVCKMGF
SLLTSLAQHHSSHTGMVKCSICDKTYKPAEAAEPATTTAPSLPSAPPPANIAPVEQPEKPYSCPVCQKPF
KHLSELSRHERIHTGEKPYKCTLCDKSFSQSSHLVHHKRTHSSERPYKCAVCEKTFKHRSHLVRHMYAHS
GEHHLFRCNVCELHFKESSELLQHPCTPSGERPFRCGECQKAFKRPSDLRQHERTHSAERPFKCDLCPMG
FKQQYALMRHRRTHKTEEPFKCGLCEKGFGQPSHLLYHQHVHTLETLFKCPVCQKGFDQSAELLRHKCLP
TSTERPFKCPVCNKAYKRASALQKHQLSHCAAAEKPLRCTLCERRFFSSSEFVQHRCDPAREKPLKCPDC
EKRFKYASDLQRHRRVHTGEKPYKCPSCDKAFKQREHLNKHQGVHAREQQFKCVWCGERFLDVALLQEHS
AQHSAAAAAAEGAYQVAACLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH