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Report for CCDS22626.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22626.1 Public Mus musculus 8 Ddx28 23 108 98 CCDS HistoryNCBI Gene:71986Re-query CCDS DB by CCDS ID:22626.1Re-query CCDS DB by GeneID:71986See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22626.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058579.6 ENSMUSP00000058950.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058579.6Link to Ensembl Protein Viewer:ENSMUSP00000058950.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000058579Re-query CCDS DB by Protein ID:ENSMUSP00000058950
Original member Current member NCBI NM_028038.3 NP_082314.2 Accepted alive Link to Nucleotide Sequence:NM_028038.3Link to Protein Sequence:NP_082314.2Re-query CCDS DB by Nucleotide ID:NM_028038Re-query CCDS DB by Protein ID:NP_082314Link to BLAST:NP_082314.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082314.2 540 Q9CWT6 540 100% 0 0

Chromosomal Locations for CCDS 22626.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 106009802 106011424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1623 nt):
ATGGCTTTAGCCGGGCCATCGCGGCTGCTGGCGTTAGCAGTACGGTTGCTTCTGGAGCCTCGACGGAACC
TAGTGGTGCGCGGTTCCGACCAGTCCTTGCCAGTGGTGCGCGTTCCGCGGGCTCTGCAGCGACGGCAGGA
ACAGCGACAGAGCGGCCGTGGGAGTTTGCAGCGGCCAGTGCTAGTGCGCCCCGGTCCCCTGCTGGTCTCG
GCGCGGCGGCCGGAGTTGAACCAGCCCGCACGCCTCACGCTGGGCCGTTGGGAGCGAGCGCCACTGGCTT
CCCGTGGCTGGAAGCATCGGCGATCGCGGCAAGACCATTTCTCCATAGAGCGAGTGCAGCAAGAGGCGCC
CGCCCTGAGGAACCTCTCGTCCCGGGGCAGCTTCGTGGACCTGGGTCTGGAACCCCGAGTGCTGCTGGCG
CTTCAGGAGGCTGTCCCCGAAGTTGTGCAGCCAACCTCAGTGCAGTCGAAAACCATCCCCCCACTGCTTC
GAGGCCGCCACCTCCTTTGCGCTGCGGAAACTGGCAGTGGCAAGACGCTTAGCTACCTACTGCCCCTATT
TCAGCGGCTCCTGAGAGGGTCAGACCTGGACTCCCGCAGTTTCACGGCTCCTCGAGGCTTGGTTCTGGTA
CCTTCCCGAGAACTAGCCGAACAGGTGCAGGCAGTGGCCCAGTCACTGGGTGGGTACTTGGGCCTGCAGG
TGATAGAACTTGGCGGAGGCCTCGGGATGAGTAGGCTCAAACTTCAGCTGTATAGACGACCGGCAGCCGA
TGTGTTAGTGGCTACTCCAGGGGCGCTGTGGAAGGCTCTGAAAAGTCAACTGATCAGCTTACAGCATCTT
AACTTCATAGTGCTAGATGAAGTAGACACACTGCTAGATGAAAGCTTCCTGGAACTGGTGGACTACATCT
TGGAAAAGAGCCCTATAGCAGAAAGTCCAGCCGAGTTAGAAGACCCCTTTAATCCCAAAGCCCAGTTAGT
GCTGGTGGGAGCCACGTTTCCAGAAGGCCTAAACCAGTTACTGAGTAAAGTCACCAGTCCAGACAGTCTG
ACCACCATTACCAGCTCCAAGCTGCACTGTCTCATGCCTCATGTCAGACAGACATTTATGAGACTGAAGG
GAGCAGACAAGGTGACAGAACTGGTTCAGATCCTCAAACAGCAGGACAAAGCAAGTAAGACGGAACCCTC
GGGAACTGTCCTGGTATTCTGCAACAGCGCCAGCACCGTGAACTGGCTTGGGTACATTCTGGATGACCAC
AAGATTCAACATCTAAGGCTGCAAGGGCAAATGCCGGCCTCAATGAGGGCAGGTATCTTCCAGAGTTTCC
AGAAGGGCTCCCAGAACATACTTGTCTGCACAGACATCGCCTCCCGAGGCCTAGACAGTGTCCACGTGGA
AGTGGTTATCAATTACGATTTCCCCCCTACCCTGCAGGATTACATCCACAGAGCAGGAAGGGTGGGTCGT
GTGGGCAGCGAAGTGCCAGGGTCCGTTATCAGTTTTGTGACCCACCCCTGGGATGTGAGCCTGGTTCAGA
AAATTGAACTGGCAGCTCGCCGAAGGAGAAGCCTTCCAGGACTAGCATCTTCAGTGGGGGACCCTTTGCC
TCAAAAGGCCTGA

Translation (540 aa):
MALAGPSRLLALAVRLLLEPRRNLVVRGSDQSLPVVRVPRALQRRQEQRQSGRGSLQRPVLVRPGPLLVS
ARRPELNQPARLTLGRWERAPLASRGWKHRRSRQDHFSIERVQQEAPALRNLSSRGSFVDLGLEPRVLLA
LQEAVPEVVQPTSVQSKTIPPLLRGRHLLCAAETGSGKTLSYLLPLFQRLLRGSDLDSRSFTAPRGLVLV
PSRELAEQVQAVAQSLGGYLGLQVIELGGGLGMSRLKLQLYRRPAADVLVATPGALWKALKSQLISLQHL
NFIVLDEVDTLLDESFLELVDYILEKSPIAESPAELEDPFNPKAQLVLVGATFPEGLNQLLSKVTSPDSL
TTITSSKLHCLMPHVRQTFMRLKGADKVTELVQILKQQDKASKTEPSGTVLVFCNSASTVNWLGYILDDH
KIQHLRLQGQMPASMRAGIFQSFQKGSQNILVCTDIASRGLDSVHVEVVINYDFPPTLQDYIHRAGRVGR
VGSEVPGSVISFVTHPWDVSLVQKIELAARRRRSLPGLASSVGDPLPQKA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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