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Report for CCDS22665.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22665.1 Public Mus musculus 8 Sf3b3 23 108 98 CCDS HistoryNCBI Gene:101943Re-query CCDS DB by CCDS ID:22665.1Re-query CCDS DB by GeneID:101943See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22665.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042012.6 ENSMUSP00000045073.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042012.6Link to Ensembl Protein Viewer:ENSMUSP00000045073.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000042012Re-query CCDS DB by Protein ID:ENSMUSP00000045073
Original member Current member NCBI NM_133953.2 NP_598714.1 Accepted alive Link to Nucleotide Sequence:NM_133953.2Link to Protein Sequence:NP_598714.1Re-query CCDS DB by Nucleotide ID:NM_133953Re-query CCDS DB by Protein ID:NP_598714Link to BLAST:NP_598714.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598714.1 1217 Q921M3-1 1217 100% 0 0

Chromosomal Locations for CCDS 22665.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 110810941 110811081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110811391 110811495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110811979 110812122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110812966 110813064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110813623 110813835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110814530 110814655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110815903 110816059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110816155 110816360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110817544 110817718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110820707 110820861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110821468 110821590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110823375 110823518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110824165 110824320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110825502 110825657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110826095 110826246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110831484 110831556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110833780 110833875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110835549 110835714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110837292 110837395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110838212 110838349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110839872 110839984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110841110 110841251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110841771 110841943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110842688 110843014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110844463 110844532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3654 nt):
ATGTTTCTGTACAACCTGACCTTACAGCGGGCCACTGGCATCAGCTTTGCCATCCATGGCAACTTCTCTG
GAACCAAGCAACAGGAAATTGTTGTTTCCCGTGGGAAGATTTTGGAGTTACTACGCCCAGACCCTAACAC
TGGCAAAGTACATACCCTCCTCACTGTTGAAGTATTTGGTGTTATCCGGTCACTTATGGCGTTTAGGCTA
ACAGGTGGCACCAAAGACTACATTGTAGTTGGCAGTGACTCAGGCCGGATTGTTATCTTGGAATACCAGC
CATCAAAGAATATGTTTGAGAAAATTCACCAAGAAACTTTTGGCAAAAGCGGATGTCGCCGTATTGTTCC
TGGCCAGTTCTTAGCTGTGGATCCCAAAGGAAGAGCTGTTATGATTAGTGCAATTGAGAAGCAGAAATTG
GTATATATCTTGAACAGAGACGCTGCAGCCCGACTTACCATTTCCTCTCCCCTGGAGGCCCACAAAGCGA
ACACTCTGGTGTATCACGTGGTTGGCGTAGACGTGGGATTTGAGAATCCTATGTTTGCTTGTCTGGAAAT
GGATTATGAGGAGGCAGACAATGATCCAACAGGGGAAGCAGCAGCCAATACCCAGCAGACACTTACTTTC
TATGAACTGGACCTTGGCTTAAATCATGTGGTTCGGAAATACAGTGAACCCTTGGAGGAACATGGCAACT
TCCTTATTACAGTTCCTGGAGGGTCAGATGGTCCAAGTGGAGTGCTAATCTGCTCTGAGAATTATATCAC
CTACAAGAACTTTGGTGACCAGCCAGACATCCGATGTCCAATTCCCAGGAGACGGAATGACCTGGATGAC
CCTGAACGAGGAATGATTTTTGTTTGCTCTGCCACCCATAAGACCAAGTCCATGTTCTTCTTTCTGGCCC
AAACGGAGCAGGGAGATATCTTTAAGATCACTTTAGAGACAGATGAAGATATGGTAACCGAGATCCGCCT
CAAGTATTTTGATACTGTGCCTGTTGCTGCTGCTATGTGTGTGCTTAAAACAGGCTTCCTTTTTGTGGCG
TCAGAATTTGGAAATCATTACTTGTATCAAATTGCCCATCTCGGAGATGATGATGAAGAACCTGAGTTTT
CGTCTGCCATGCCTCTAGAAGAAGGAGACACATTCTTCTTTCAGCCGAGACCACTCAAAAATCTCGTGCT
GGTGGATGAACTGGACAGCCTCTCTCCTATTCTGTTTTGCCAGATAGCTGATTTGGCCAATGAAGACACC
CCACAGCTGTATGTAGCCTGTGGTAGGGGACCCCGGTCCTCCCTGAGAGTCTTAAGGCATGGACTTGAGG
TGTCGGAAATGGCTGTTTCTGAGCTCCCTGGTAACCCCAATGCTGTCTGGACAGTCCGTCGGCACATTGA
AGATGAGTTTGATGCCTACATCATTGTGTCTTTCGTGAATGCCACACTTGTGCTATCTATCGGAGAGACT
GTGGAAGAAGTGACTGACTCTGGCTTCTTGGGCACCACTCCAACCTTGTCCTGCTCCTTGTTAGGAGATG
ATGCACTGGTGCAGGTGTATCCAGATGGCATCCGACACATACGAGCAGATAAAAGAGTTAATGAGTGGAA
GACTCCCGGCAAGAAAACGATTGTGAAGTGTGCAGTGAACCAGCGACAAGTGGTGATCGCCCTGACTGGG
GGAGAGCTGGTCTATTTCGAGATGGATCCTTCAGGACAGTTGAATGAGTACACGGAGCGGAAAGAGATGT
CAGCAGATGTGGTGTGCATGAGTCTGGCCAACGTGCCCCCTGGAGAACAGCGATCTCGGTTCCTGGCTGT
GGGGCTGGTGGACAACACTGTCAGAATCATCTCCCTCGACCCATCAGACTGTTTACAGCCTCTGAGTATG
CAGGCTCTCCCAGCCCAGCCTGAGTCTCTATGTATTGTGGAAATGGGTGGGACTGAGAAACAAGATGAGC
TGGGTGAGAGAGGCTCTATTGGCTTCCTGTACCTGAACATTGGACTACAGAACGGTGTACTGCTGAGGAC
TGTCCTAGACCCTGTTACTGGGGACCTGTCTGACACCCGCACTAGGTATCTGGGGTCCCGTCCTGTGAAA
CTCTTCCGGGTCCGGATGCAAGGCCAGGAGGCTGTTCTGGCTATGTCCAGTCGCTCATGGCTGAGCTACT
CTTACCAGTCTCGCTTCCATCTCACCCCTCTGTCTTATGAGACCCTGGAATTTGCATCGGGCTTTGCCTC
TGAACAGTGTCCCGAGGGCATTGTTGCCATCTCCACCAACACTTTGAGGATTTTGGCTTTAGAGAAGCTT
GGTGCTGTCTTCAATCAAGTAGCCTTCCCATTGCAGTACACACCCAGGAAGTTTGTCATCCACCCTGAGA
GTAACAACCTTATCATCATTGAGACGGATCACAATGCCTACACTGAGGCCACAAAAGCTCAGAGAAAGCA
GCAGATGGCTGAGGAAATGGTAGAAGCAGCAGGGGAGGATGAGCGGGAGTTGGCTGCAGAAATGGCAGCA
GCATTCCTCAATGAAAACCTCCCAGAATCCATTTTTGGAGCTCCCAAGGCTGGCAATGGGCAGTGGGCCT
CTGTGATTCGGGTGATGAACCCTATCCAGGGGAATACACTAGACCTTGTCCAGTTGGAGCAAAACGAGGC
AGCCTTTAGTGTGGCAGTGTGTAGGTTCTCCAACACTGGTGAAGATTGGTATGTGCTGGTGGGTGTTGCC
AAGGACTTGATACTGAGCCCTCGATCTGTGGCAGGGGGCTTTGTGTATACGTACAAGCTTGTGAACAACG
GGGAGAAGTTGGAGTTTCTGCACAAGACTCCAGTGGAAGAGGTCCCTGCTGCCATTGCCCCATTCCAGGG
GAGGGTACTGATTGGTGTCGGGAAGCTTTTACGAGTTTATGACCTGGGGAAGAAGAAGTTACTTCGAAAG
TGTGAGAATAAGCATATTGCCAATTACATATCTGGGATCCAGACAATTGGTCACAGGGTAATTGTGTCTG
ATGTCCAAGAAAGTTTCATCTGGGTTCGATACAAGCGTAACGAGAACCAGCTCATTATCTTTGCTGATGA
CACCTATCCCAGATGGGTCACCACAGCCAGCCTTCTCGACTATGACACTGTGGCTGGGGCAGACAAGTTT
GGCAACATTTGTGTGGTGAGGCTCCCACCTAACACCAACGATGAGGTGGATGAAGATCCCACTGGAAACA
AAGCCCTGTGGGACCGGGGCTTGCTCAATGGGGCTTCACAGAAGGCAGAGGTCATCATGAACTACCACGT
TGGAGAGACCGTGCTGTCGCTACAGAAGACCACACTGATCCCTGGAGGCTCAGAGTCCCTTGTCTATACC
ACTTTATCTGGAGGAATTGGCATCCTTGTCCCTTTCACGTCTCACGAGGACCATGACTTCTTCCAGCATG
TTGAAATGCACCTGCGGTCTGAGCATCCCCCTCTTTGTGGACGGGACCACCTGAGCTTTCGTTCTTACTA
TTTCCCTGTTAAGAATGTGATTGATGGAGACCTTTGTGAGCAGTTCAACTCCATGGAACCCAACAAGCAG
AAGAACGTCTCTGAGGAGCTGGACCGAACCCCACCTGAAGTGTCCAAGAAGCTTGAGGACATTAGGACCC
GCTATGCCTTCTGA

Translation (1217 aa):
MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGVIRSLMAFRL
TGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQFLAVDPKGRAVMISAIEKQKL
VYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENPMFACLEMDYEEADNDPTGEAAANTQQTLTF
YELDLGLNHVVRKYSEPLEEHGNFLITVPGGSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDD
PERGMIFVCSATHKTKSMFFFLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVA
SEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGET
VEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPGKKTIVKCAVNQRQVVIALTG
GELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSM
QALPAQPESLCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVK
LFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKL
GAVFNQVAFPLQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTGEDWYVLVGVA
KDLILSPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRK
CENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKF
GNICVVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYT
TLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQ
KNVSEELDRTPPEVSKKLEDIRTRYAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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