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Report for CCDS22743.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22743.1 Public Mus musculus 8 Pabpn1l 23 108 98 CCDS HistoryNCBI Gene:382035Re-query CCDS DB by CCDS ID:22743.1Re-query CCDS DB by GeneID:382035See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22743.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093059.2 ENSMUSP00000090747.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093059.2Link to Ensembl Protein Viewer:ENSMUSP00000090747.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000093059Re-query CCDS DB by Protein ID:ENSMUSP00000090747
Original member Current member NCBI NM_001007462.1 NP_001007463.1 Accepted alive Link to Nucleotide Sequence:NM_001007462.1Link to Protein Sequence:NP_001007463.1Re-query CCDS DB by Nucleotide ID:NM_001007462Re-query CCDS DB by Protein ID:NP_001007463Link to BLAST:NP_001007463.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007463.1 273 Q5XFR0 273 100% 0 0

Chromosomal Locations for CCDS 22743.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 122619734 122619773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122620283 122620422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122620845 122620932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122621030 122621136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122621648 122621715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122621989 122622124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122622434 122622676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (822 nt):
ATGGAGCCTTACCTGAGCAATGAGCTCTTCCCACCCCCCACTGAAGCCTGGCTCCAGACGGTCTCCTCAG
ATCCTGAGGCCCAAGGTTGGGGGGCCTGGGGCAGGACTGAAAAGACCTCCTTGGTGCCAAGGGCTGGGAG
TAGAGCAGGAAGTGACAAGGAAGCAGAGGAAAATGAAGATGCGAGCTTCCTTCTCTCCCTGCTGGAACCA
GAGAACCTGGCCAAGTCCCCAGTATTCAACCAGGAGTTGGAGGCCATCAAGCTGAAACTGTGGGCCATGG
AGCATGCTGAAGCCCAGCCGGAGCCACCCTGTGTACAGAGAAAGGCCACAGAGGAAGAGAGGGCTGAGGT
CAGACAGCTGCTGAGCCCTGAGACCGTAGACTGCTTCTTCTCTAGGACCTCCAAGGAAAATGTGGAGGCT
GACCACAGATCTGTCTTTGTAGGCAATGTGGATTATGGTGGCTCAGCTGCAGAGCTGGAGGCCTACTTCA
GTCCCTGTGGGGAGATTCACCGGGTCACTATCCTGTGCGACAAGTTCTCTGGACACCCCAAGGGCTATGC
ATATATAGAGTTTGCTTCGCACAGATCTGTCAAGGCTGCTGTGGGGCTGGATGAGAGCACCTTCCGAGGT
CGGGTCATCAAGGTACTTCCCAAAAGGACGAACTTCCCAGGCATCAGCTCCACAGACCGTGGAGGGCTGC
GGACACACTCGGGCAACAGGGCTGCCTTCCTGCACGGTAGCCTCCATCGAAAAGCTCGGTTAAGAGCCCA
TGGACGGAGCCGGGGCCATGGAGGAGCACCACAGTGGTTCTCTCCCTACTGA

Translation (273 aa):
MEPYLSNELFPPPTEAWLQTVSSDPEAQGWGAWGRTEKTSLVPRAGSRAGSDKEAEENEDASFLLSLLEP
ENLAKSPVFNQELEAIKLKLWAMEHAEAQPEPPCVQRKATEEERAEVRQLLSPETVDCFFSRTSKENVEA
DHRSVFVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASHRSVKAAVGLDESTFRG
RVIKVLPKRTNFPGISSTDRGGLRTHSGNRAAFLHGSLHRKARLRAHGRSRGHGGAPQWFSPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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