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Report for CCDS22836.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22836.1 Public Mus musculus 9 Taf1d 23 108 98 CCDS HistoryNCBI Gene:75316Re-query CCDS DB by CCDS ID:22836.1Re-query CCDS DB by GeneID:75316See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22836.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034415.5 ENSMUSP00000034415.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034415.5Link to Ensembl Protein Viewer:ENSMUSP00000034415.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034415Re-query CCDS DB by Protein ID:ENSMUSP00000034415
Original member Current member NCBI NM_029248.2 NP_083524.2 Accepted alive Link to Nucleotide Sequence:NM_029248.2Link to Protein Sequence:NP_083524.2Re-query CCDS DB by Nucleotide ID:NM_029248Re-query CCDS DB by Protein ID:NP_083524Link to BLAST:NP_083524.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083524.2 322 Q9D4V4-1 322 100% 0 0

Chromosomal Locations for CCDS 22836.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 15307754 15307821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15308525 15308915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15309859 15310034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15310358 15310409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15311527 15311695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15311909 15312021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGGCTCAATCAGAAGTGAATTCTGTCTGTGTGGCATCGGATAGAGCTGGAGATACTGGAGACCAAAGTG
ATGACTCCTCTGATGGCAGCTTATTTAAAACTCAGTGTGCTCCTTCACCTATACAAAAGCAAAGACACCC
TACTGTGAAACGTGTTACTTTACCTGCAAGTGTTGAAACAGATTCATCAAGTGACTCTTCTATAGAACCA
AGGCCTCTGACTTTAAAGGCTATTTTTGAAAGATTTAAAAAAAAGAAACGGAAAAAGAGGAAAAAGAGAA
AATATGAGCCAAAATTAAGACCAAGAGGAAGACCAAGAGGAAAACCATCGGGAACGAGGATCACTAGAAG
GTCGCAAATAGATGCAAAACAAATTAAAGACAAAGGAGCTGTGTTTCCATTCTTAGAATCTGAGAGTGGA
AGAAAACCTTTACCTTGGAAGAAAATTTTAACATATGAGCAAGCTGTTGCAAGAGGATTTTTTCACCACA
TTGAAAAACTCAAGTATGAACACCACCTTAAGGAATGCTTGAAGCAAATGCATGCTGGGGAAGATTTAGA
AAAGGAAGACCTTGACAGTCGGAGGCACAAATACATGGATGATGATGGTTCACTTTCTCCTATTGAAGAG
CCATTAACTGAAGATGAAGCAACAAATCCTCAGGCTGAATGTGATATCAAGTTGGTTGAAGACAGTTGCT
TCATAATAAGTTCAGAATTCTCAAGGAAGAGAAACTTGGAACAAGAGAAGATTAAGAAAGAATCTACATT
TTCTAAAAAAGCCAAAGATGCCACACACAGAGAGAAAGGGCACAGAAGAACCTTGAAAGGAAATGAACAT
GTGACTATTGAAGAAGATTCAAGACCCCAGCCTCGCCCTTTTGCTCATCTGCAGAGCAAGGTCATGAAGA
AAGGAGAGTTAGAGTATCTGGAGGTTCACCACCTCTGTGGTCTGTCGCAGCCACTATGA

Translation (322 aa):
MAQSEVNSVCVASDRAGDTGDQSDDSSDGSLFKTQCAPSPIQKQRHPTVKRVTLPASVETDSSSDSSIEP
RPLTLKAIFERFKKKKRKKRKKRKYEPKLRPRGRPRGKPSGTRITRRSQIDAKQIKDKGAVFPFLESESG
RKPLPWKKILTYEQAVARGFFHHIEKLKYEHHLKECLKQMHAGEDLEKEDLDSRRHKYMDDDGSLSPIEE
PLTEDEATNPQAECDIKLVEDSCFIISSEFSRKRNLEQEKIKKESTFSKKAKDATHREKGHRRTLKGNEH
VTIEEDSRPQPRPFAHLQSKVMKKGELEYLEVHHLCGLSQPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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