NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22961.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22961.1 Public Mus musculus 9 Fam118b 23 108 98 CCDS HistoryNCBI Gene:109229Re-query CCDS DB by CCDS ID:22961.1Re-query CCDS DB by GeneID:109229See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22961.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059057.13 ENSMUSP00000058377.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059057.13Link to Ensembl Protein Viewer:ENSMUSP00000058377.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000059057Re-query CCDS DB by Protein ID:ENSMUSP00000058377
Original member Current member EBI ENSMUST00000121564.7 ENSMUSP00000113537.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121564.7Link to Ensembl Protein Viewer:ENSMUSP00000113537.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121564Re-query CCDS DB by Protein ID:ENSMUSP00000113537
Original member Current member NCBI NM_001286604.1 NP_001273533.1 Accepted alive Link to Nucleotide Sequence:NM_001286604.1Link to Protein Sequence:NP_001273533.1Re-query CCDS DB by Nucleotide ID:NM_001286604Re-query CCDS DB by Protein ID:NP_001273533Link to BLAST:NP_001273533.1
Original member Current member NCBI NM_194257.2 NP_919233.1 Accepted alive Link to Nucleotide Sequence:NM_194257.2Link to Protein Sequence:NP_919233.1Re-query CCDS DB by Nucleotide ID:NM_194257Re-query CCDS DB by Protein ID:NP_919233Link to BLAST:NP_919233.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273533.1 351 Q8C569-1 351 100% 0 0
NP_919233.1 351 Q8C569-1 351 100% 0 0

Chromosomal Locations for CCDS 22961.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 35217734 35217747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35217929 35217988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35221380 35221665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35223614 35223742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35227164 35227391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35235231 35235483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35244614 35244699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGGCTTCTACAGGGAGCCAGGCCTCTGATAAAAACAAGATTTTTGGATTCTTCAATGATGGCGAACCCC
CCACCAAAAAGCCCAGGAAGCTGCTTCCAAGCCTGAAAACCAAAAAGCCTCGAGAACTTGTGCTGGTGAT
TGGGACAGGCATCAGTGCTGCGGTTGCACCGCAGGTCCCAGCCCTGAAATCCTGGAAGGGCTTAATCCAG
GCCTTACTGGATGCTGCTATTGATTTTGATCTTTTAGAAGACGAGGAAAGCAAAAAGTTTCAGAAGTGTC
TCCATGAAGACAAGAACCTCGTCCATGTCGCCCATGACCTCATTCAGAAACTCTCCCCTCGTACCAGTAA
TGTTCGATCCACATTTTTCAAAGACTGTTTATATGAAGTATTTGATGACCTGGAATCAAAGATGGAAGAT
TCTGGAAAACAGCTCCTTCAGTCTGTTCTCCATCTGATGGAAAATGGAGCCCTAGTATTAACTACAAATT
TTGATAATCTCCTAGAACTCTATGCAGCTGACCAGGGAAAACAGCTTGAATCCCTTGACCTTACTGATGA
GAAAAAGGTCCTGGAGTGGGCTCAGGAGAAGCGGAAGCTAAGTGTGCTACACATCCATGGGGTCTACACC
AATCCTAGCGGCATTGTCCTCCACCCAGCTGGATATCAGAATGTGCTCAGGAACACTGAAGTTATGAGAG
AGATTCAGAAACTCTATGAAAACAAGTCATTTCTTTTCTTGGGTTGTGGCTGGACAGTGGACGACACCAC
TTTCCAGGCCCTGTTCCTAGAGGCCGTCAAGCATAAATCTGACCTAGAACATTTCATGTTGGTTCGGAGA
GGAGATGTAGATGAATTCAAGAAGCTTCGAGAAAACATGTTGGACAAGGGGATAAAGGTCATCTCCTATG
GAAATGACTATGCTGATCTTCCAGAATATTTCAAACGACTGACATGTGAGATCTCCACAAGAGGCAGATC
AGCAGGGATGGCAAGAGAAGGTCAGCTAAATGGTTCATCTGCAGCACATGGTGAAATAAGAGGCTGTAGT
ACTTGA

Translation (351 aa):
MASTGSQASDKNKIFGFFNDGEPPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVPALKSWKGLIQ
ALLDAAIDFDLLEDEESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRSTFFKDCLYEVFDDLESKMED
SGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLESLDLTDEKKVLEWAQEKRKLSVLHIHGVYT
NPSGIVLHPAGYQNVLRNTEVMREIQKLYENKSFLFLGCGWTVDDTTFQALFLEAVKHKSDLEHFMLVRR
GDVDEFKKLRENMLDKGIKVISYGNDYADLPEYFKRLTCEISTRGRSAGMAREGQLNGSSAAHGEIRGCS
T


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH