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Report for CCDS23136.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23136.1 Public Mus musculus 9 Rnf214 23 108 98 CCDS HistoryNCBI Gene:235315Re-query CCDS DB by CCDS ID:23136.1Re-query CCDS DB by GeneID:235315See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23136.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058720.12 ENSMUSP00000060941.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058720.12Link to Ensembl Protein Viewer:ENSMUSP00000060941.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000058720Re-query CCDS DB by Protein ID:ENSMUSP00000060941
Original member Current member EBI ENSMUST00000160699.8 ENSMUSP00000123754.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160699.8Link to Ensembl Protein Viewer:ENSMUSP00000123754.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160699Re-query CCDS DB by Protein ID:ENSMUSP00000123754
Original member Current member NCBI NM_001361112.1 NP_001348041.1 Accepted alive Link to Nucleotide Sequence:NM_001361112.1Link to Protein Sequence:NP_001348041.1Re-query CCDS DB by Nucleotide ID:NM_001361112Re-query CCDS DB by Protein ID:NP_001348041Link to BLAST:NP_001348041.1
Original member Current member NCBI NM_178709.5 NP_848824.1 Accepted alive Link to Nucleotide Sequence:NM_178709.5Link to Protein Sequence:NP_848824.1Re-query CCDS DB by Nucleotide ID:NM_178709Re-query CCDS DB by Protein ID:NP_848824Link to BLAST:NP_848824.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348041.1 668 Q8BFU3-1 668 100% 0 0
NP_848824.1 668 Q8BFU3-1 668 100% 0 0

Chromosomal Locations for CCDS 23136.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 45864933 45864998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45866566 45866661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45867500 45867632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45867739 45868115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45869179 45869277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45869454 45869544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45871546 45871634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45871871 45871967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45890804 45890943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45896085 45896225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45898432 45898491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45899746 45900256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45904806 45904912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2007 nt):
ATGGCGGCCTCTGAGGTAGCTGGCCTTGGGGCCGGTACCCCGAGTCCTTCGGAATCTTCTGCTTTGTGTG
CATCCAAGTCCGATGAATCTCTCCCAGATGGCCTAAGCCCCAAAGACTCTGCCCAGAAACAGAAGAACTT
GTCTCCGCCGAGTGTAAGTAGCCAAATGATAACCAAGGAGAGTAACAGAAATGCCCATTTGGAACATCCA
GAACAGAATCCTGGTTCATCAGTGGGTGATACTTCAGCAGCGCACGAGGAAGTTGTAGGAGAAAACTTGG
TAGCCACAGCCCTTTGTCTTTCTGGCAATGGGTCTCAGTCTGATTTGAAGGACTTGACCAACCCAGCAGG
AGAGGAGGGGGACACGAGCCTCCGGGAGAGCCTCCATCCAGTCACTCGGTCTCTTAAGGCAGGGTGCCAC
TCAAAACAACTTGCCTCCGGGAATTGCTCTGAAGAGAAATGCCCAGCAGCCTCCGTCCTAAAGGAAGGTA
GCAGGGATGCAGGCTTGGACTTGCTACCTGTAGTACCGCCTGCAAATGGGGTTGAAGGAGTGAGAGTGGA
TCAGGATGATGATCAGGATAGCTCTTCCTTGAAGCTTTCTCAGAACATTGCTGTGCAGACTGACTTTAAA
ACAGCAGATTCGGAAGTAAACACAGACCAAGATATTGAAAAGAATCTGGACAAAATGATGACAGAGAGAA
CTCTGTTGAAGGAGCGTTACCAAGAAGTCCTGGACAAGCAGAGGCAGGTGGAGAGTCAGCTCCAGGTGCA
GTTAAAGCAGCTTCAGCAAAGGCGAGAAGAAGAAATGAAGAATCACCAGGAGATACTAAAGGCCATTCAG
GATGTGACCATAAAGCGAGAAGAAACCAAGAAGAAGATAGAGAAAGAAAAGAAGGAGTTCTTGCAGAAGG
AGCAGGACCTGAAAGCTGAAATCGAGAAGCTCTGTGAGAAGGGCAGAAGAGAAGTGTGGGAAATGGAACT
GGATAGACTCAAGAACCAGGATGGTGAAATCAACCGGAATATTATGGAAGAGACAGAGCGGGCCTGGAAA
GCAGAGATACTGTCACTAGAGAGCCGGAAGGAGTTGCTGGTGTTGAAACTGGAAGAAGCAGAAAAAGAAG
CAGAACTTCATCTGACTTACCTCAAGTCAACTCCTCCAACACTAGAGACAGTTCGTTCCAAACAAGAGTG
GGAGACAAGACTGAATGGAGTTCGGATAATGAAAAAGAATGTTCGGGACCAGTTTAATAGTCATATCCAG
CTAGTGAGGAATGGAGCCAAGCTGAGCAGCCTTCCTCAGATCCCTACCCCAACTTTGCCTCCACCACCCT
CAGAGGCAGATTTCATGCTTCAAGTATTTCAGCCCAGTCCCTCTCTGACCCCTCGGATGCCCTTCTCTAT
CGGGCAGGTCACTATGCCTATGGTTATGCCCAGTGCGGATCCTCGCTCTTTGTCTTTTCCGATCTTGAAC
CCTGCCCTTTCCCAGTCCAGCCAACCTTCCCCACCTCTTCCTGGCTCACATGGGAGAAATAGCCCTGGCT
TGGGTTCCCTGGTCAGCCCTCATGGTCCACACATGCCTCCTGCTGCCTCCATCCCGCCTCCCCCAGGCTT
GGGCGGTATTAAGGCTTCTTCTGAAACTCCCCGGCCCCAACCAGTAGACAAACTGGAGAAGATCCTGGAG
AAGCTGCTGACTCGGTTCCCACAGTGCAATAAGGCCCAGATGACCAACATTCTTCAGCAAATCAAGACAG
CACGTACCACCATGGCGGGCCTGACCATGGAGGAACTAATCCAACTGGTAGCCGCACGACTGGCAGAGCA
TGAACGGGTGGCATCAAGCACTCAGGCTCCACCCACTTGTAAACTGTGTCTGATGTGTCAGAAACTTGTC
CAGCCCAGTGAGCTGCACCCGATGGCCTGCACCCACGCACTGCACAAGGAGTGTATCAAATTCTGGGCCC
AGACCAACACAAATGACACTTGTCCCTTTTGCCCAACTCTTAAATGA

Translation (668 aa):
MAASEVAGLGAGTPSPSESSALCASKSDESLPDGLSPKDSAQKQKNLSPPSVSSQMITKESNRNAHLEHP
EQNPGSSVGDTSAAHEEVVGENLVATALCLSGNGSQSDLKDLTNPAGEEGDTSLRESLHPVTRSLKAGCH
SKQLASGNCSEEKCPAASVLKEGSRDAGLDLLPVVPPANGVEGVRVDQDDDQDSSSLKLSQNIAVQTDFK
TADSEVNTDQDIEKNLDKMMTERTLLKERYQEVLDKQRQVESQLQVQLKQLQQRREEEMKNHQEILKAIQ
DVTIKREETKKKIEKEKKEFLQKEQDLKAEIEKLCEKGRREVWEMELDRLKNQDGEINRNIMEETERAWK
AEILSLESRKELLVLKLEEAEKEAELHLTYLKSTPPTLETVRSKQEWETRLNGVRIMKKNVRDQFNSHIQ
LVRNGAKLSSLPQIPTPTLPPPPSEADFMLQVFQPSPSLTPRMPFSIGQVTMPMVMPSADPRSLSFPILN
PALSQSSQPSPPLPGSHGRNSPGLGSLVSPHGPHMPPAASIPPPPGLGGIKASSETPRPQPVDKLEKILE
KLLTRFPQCNKAQMTNILQQIKTARTTMAGLTMEELIQLVAARLAEHERVASSTQAPPTCKLCLMCQKLV
QPSELHPMACTHALHKECIKFWAQTNTNDTCPFCPTLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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