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Report for CCDS23141.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23141.1 Public Mus musculus 9 Apoc3 23 108 98 CCDS HistoryNCBI Gene:11814Re-query CCDS DB by CCDS ID:23141.1Re-query CCDS DB by GeneID:11814See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23141.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034586.8 ENSMUSP00000034586.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034586.8Link to Ensembl Protein Viewer:ENSMUSP00000034586.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000034586Re-query CCDS DB by Protein ID:ENSMUSP00000034586
Original member Current member EBI ENSMUST00000118649.7 ENSMUSP00000113058.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118649.7Link to Ensembl Protein Viewer:ENSMUSP00000113058.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118649Re-query CCDS DB by Protein ID:ENSMUSP00000113058
Original member Current member NCBI NM_001289756.1 NP_001276685.1 Accepted alive Link to Nucleotide Sequence:NM_001289756.1Link to Protein Sequence:NP_001276685.1Re-query CCDS DB by Nucleotide ID:NM_001289756Re-query CCDS DB by Protein ID:NP_001276685Link to BLAST:NP_001276685.1
Original member Current member NCBI NM_023114.4 NP_075603.1 Accepted alive Link to Nucleotide Sequence:NM_023114.4Link to Protein Sequence:NP_075603.1Re-query CCDS DB by Nucleotide ID:NM_023114Re-query CCDS DB by Protein ID:NP_075603Link to BLAST:NP_075603.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276685.1 99 P33622 99 98.9899% 0 1
NP_075603.1 99 P33622 99 98.9899% 0 1

Chromosomal Locations for CCDS 23141.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 46233223 46233343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46234417 46234540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46234659 46234713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (300 nt):
ATGCAGCCCCGGACGCTCCTCACTGTGGCCCTCTTGGCTCTCCTGGCATCTGCCCGAGCTGAAGAGGTAG
AGGGATCCTTGCTGCTGGGCTCTGTACAGGGCTACATGGAACAAGCCTCCAAGACGGTCCAGGATGCGCT
AAGTAGCGTGCAGGAGTCCGATATAGCTGTGGTGGCCAGGGGCTGGATGGACAATCACTTCAGATCCCTG
AAAGGCTACTGGAGCAAGTTTACTGACAAGTTCACCGGCTTCTGGGATTCTAACCCTGAGGACCAACCAA
CTCCAGCTATTGAGTCGTGA

Translation (99 aa):
MQPRTLLTVALLALLASARAEEVEGSLLLGSVQGYMEQASKTVQDALSSVQESDIAVVARGWMDNHFRSL
KGYWSKFTDKFTGFWDSNPEDQPTPAIES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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