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Report for CCDS23181.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23181.1 Public Mus musculus 9 Exph5 23 108 98 CCDS HistoryNCBI Gene:320051Re-query CCDS DB by CCDS ID:23181.1Re-query CCDS DB by GeneID:320051See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23181.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051014.1 ENSMUSP00000062632.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051014.1Link to Ensembl Protein Viewer:ENSMUSP00000062632.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000051014Re-query CCDS DB by Protein ID:ENSMUSP00000062632
Original member Current member NCBI NM_176846.3 NP_789816.2 Accepted alive Link to Nucleotide Sequence:NM_176846.3Link to Protein Sequence:NP_789816.2Re-query CCDS DB by Nucleotide ID:NM_176846Re-query CCDS DB by Protein ID:NP_789816Link to BLAST:NP_789816.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_789816.2 1960 Q0VAV2 1960 100% 0 0

Chromosomal Locations for CCDS 23181.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 53301733 53301851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53337832 53337992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53340342 53340498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53353154 53353202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53367077 53367212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53372243 53377503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5883 nt):
ATGACGAAAGTTCCTCAGGGGTTTGATTTCAGCTTCCTAAACGAGGAAGAAGCCAGGAAGATCCTCCAGG
TACTGGAAAGAAATGAGGAACTCCGGAGGGCAGAGAAGGACAGGATCAGCAAACTTCAGAAAACAAAGAG
GGATATCAGATGGCTTCAAGGAGCAACTGGCGAATGGTTTGAAGAAATTCAAAGAAAGAAGTTTTGCAAT
GAAACAGATGTTAACCAGATGTTAAAACCACCCCTTACATATAGGCTACAAAAGGGGATGGCAAAAAATG
ATCCGATGGAATTACAAACACCAAGATCTAAAAGCCTAATAAACCAAAAACCATCTGTTTCTTCCCGAAT
GAGCTTTCGGTCATCCTTTGCTTCACTGTTCTCATTCAGACGACCTGCGAAGGAGACTCTAAAACTTCAG
TCTCCGAGACCAAACCGGTGCGATGAGCGTGTAAGACCTTCAGCGTCTGTGAGGGGGACAGCTTCGGCAA
AAATATACAATTCACCTGTTGGGAACCAACCAGTTGCCAGTGTGTTTGTTCCTAAGCCAGCCATCATGAG
GGAGGAGAGCGGTATGCCTCCGCCCTGGGACGCTTCCCTGCTGGAGAGTGAGTTTTTCCAAGTTTTAGAC
GATTTGGACAACAAGCTGGCCCAGGAACAGTCTTCAGGCTTGATGAATACCAGAGTGCCATTCAACTACG
GATCAAGAACACAGTTCAAGCTGTCTCACAGGAACAGTCATGGTCATAGCACAGGAAGGCAACAGAACTA
CCACAGTGAAACTTCCAACATGTCTATCTATAACATCCTGAGACCTGGAACCCCTAGAGAAGGCTTTAAA
ACCTTTTCTCCTAGGACAAAGACAATTTATGACATGTATAGGACCAGGGAGCCCAGAGTCTTAAAGGAAG
ACTTCATGCAAAAGAATGCATTTGGGAGTGCATCTCTGTGCTTCGACAGCCGGCAAAGATCAGCCTCACC
TGCCACAGGGAGTTTCACTGCTAGGAGTTTACACTTTCCAGCCGATACTCAAAACAAGAGTAGTTTTACA
CCAGTGAGACACCAGCAAAGCCCCAAAAGGACTCCTTTATCTTCCATCATATGGAATAGGTCAGATGCTT
CTAGACATAGGCAGAATCAAGAAGAGTCACTGGGGGTACAAGCACCAATGGACATTGACCCCGAGGAGCA
ATATGTGTCTCCTAGGTGTTTTCAAGAAAGTAGGAGGTATGAGATGTGCCATTCACAGAACGCTTACCAA
AGCTACCCTTTAAACGTCCCTGTGGCTAATGCAATGAGTCCTGACACGTTGGAGAACTCAGAGAATATGC
CATTCTACCGTCAGAGTAACCCATTTGCAAGGTCTTTCTTTAGCAGTACCTTCAGACAGAGCAGAGAACA
GAGATTTGGACAGAATTCTTTTTGGAGCCGACAGGAAGAGTATTCGTCCTGGTCTGACTTTCCCCAGAGC
AGGGGCCCATTCCCTTCTTCTGACAAGGACTTTGAAATGTTCTCTGTTGAAGCAAACAGGGCGCCATCTG
TTTGCAGCCAAGGTGTCCCTTCTCAGCACTGGAGGTCACATTCTTCCGGCCATGGAACATATGTTTTCAG
GGGCCGAGAAGATTCACATTGCTGGCGATCTGATTTTCAAACATCCCCACTGGAGAGCATGGACACCTCA
CATGTTAATGAGAACCAACATCCACCCCATTTTGTCACACCAGTTGGGTTTTCTATAACTGACTCAAGCT
GCCACCTCCAGTCCTCCAGGCTGGACTCTCAGCAGGGCTACTTCCCTGTAGAAGAAGCTGTAGATGAGGA
CCCTTATTTGTGTGGCAAGGCTCAGACTCCAGCATCTTCATTCAGAACTCCCTTCCCTCTCAGCCCTGAT
GACGGAAGGGAGTCTCAGAGTTCCAGCTTCCCGGATTCCACAGCTACTTTGCAGAAAATAATCCCCAATA
AGCCAGACTTTCTTCCAATAAGAAACTGTACGGAAGTTCCTGTGGCCTGTAGCCATTCTACTGACTCACT
GTCTCTTACTGACACCCAGCCCAACATCCCAGTCACAGAGACGAACAGTGAGAAAGATATGGATGTGTCT
GTTTCAAAGGATGAACAGCTAAACAAGACGGGCCAGAAGAGCAGGCCAACTGGGTTACCCCAATATGTTT
TACATACAGTGATCTCTAATGACTTACCTGATTTTCAAAATGCCCACTCTCGGGACTCAGCCCAAAATGA
CAGGTATGGTTTTAATGCACCTGCCACAGAACGTTCCAGAAGATCACCCAGGGTCTTCTCCAGAAAGGGT
ACTTCCCAAATTCATACAACACAAAGAGATCAAAGCAACAAACTGAGCAAAAATAAGTGTTTTGGGGGGG
ACAGGACACTTGACTCAGCAGCGTCCCCGCCTTTCATCCAAGAAAGTGGAACAGCGACATCTCTTCCCAG
CCCAAATCAAGGTTGTCACCAGAAAACAGGAAGTAATGAAGAGAGTTCAAACACCATTAAAAACAGCCAT
TGGTGCTTTGAGTCCACTGCTAACCAAAAATCACAGCCTTCCAGGGAGCCTGCTCTTTTAGATCTTGAGC
AAAGTCTTTCCACTCATTCTACCAATGACAGCAAGCTGGCCCCCGGGCACAGCATCTCACGAGCTCCTTT
ACATGTGGCATCAGATGCACCCCAAGAGTCTTTCCTTGATGCTCGTCTGGTACCTTCCACTACAGTGTTC
TCCAGGAGCCTTTCAGACCAAGATCCAGGTCAAGAACAAAGAGAAGAGAAAGACAAAGCTACCAAGAGCC
AAGATAATCAGCTGGCTGTAAATTCTACAGACAACCAAGAGAGCCATGACAGTCCTGCACTTCCACACGA
TGCTGTTCACTGCCACCCATACTCTCCCTTCAAGAATGGGAGGGGGAAGGGAAGAGTTAGGCGCCGCGTG
TCCTGTATTGAGAAGCTAACCAAAACAGAGCGTGCAGCGGCACCCACAAGAGAAGGTAGTGGCTGTGCTG
AGGACCAAAGAAGCATCAAAGATCCTGAGCTCAGCACAGTCTATTGCACCTTGCCAAGAAAACCAGCCAG
CTTTCTCATTCACAGCAGACAGCAGGAAAGTAAGGGAACGGTTGCTTCCGTTAGGAATGGGCCACTTCCC
TTCCAAATAAAAAATAAAGCCGAAGTTCCCACAGGAAAGAGCACATCTGACAAGCCCAGCTCTCCTGAAT
CAGTAAGTGATGCTGCAAATGCAGTCTCGGGGACACCCAAAGCCACCAAGAAGATGACAGATATGAAAGC
CATTAGATCTGCTTCGGTTAGGAAAGGGCCACTCCCTTTCCTCATCAAGAGGGCAATCTCGTGTCCTTCG
GGGGAGCCATGTAGCTTGGCTGAAAGCGATGACAGACAGAAGTCATCAGTCCTGGGCATGGATGCTTCTC
CTGTAATACCCAGGCCTGGAGGGAGAATCTTTAACTCTCTGGAAGGTGAACCATCGTTTAGAGAGAGTGC
TTTCTCTGAAAAGGAACTTGCTCAAGAACACACTGGAAAGGATCGTGAGCTTCGGGCCCCCAGAATGGGC
TTATTTAACCCTTCAAAAAAAACTCCCGAACGTTTGTGCGCAACTGGATCAGGAAAAGAGAGTGGGAGAG
CATTACATAAGTTTAAGACAACTAGCATGTTTTCTGTTTCTGGCGATGAAGAGAACGTGAACTGTCTTGA
GGTGGTTTCAATCTATTACACTCTACCAAGGAAACCCAGCAAAAAATTCTGCAGCCTCCTTCAGCAGTAC
ACACAAGGTACCGATTCACTTAGAGATGCTTTCCAGGGAGAGACTGAAGCACTTCCTAATGCTTTAGAAA
TCGATGAGCTGAACTGTCCTGCACAAGTGCAATCAGGAATACCTCCACCACAAGACCCAAAGATGCAGGT
TGACTCCGCTCCATGCTGTCTCTCCCACAGCCCTGAAAGTAAGGATGTCTCCCAATTGCCAGATAGAGAG
ACTTCCAAATCTACATTAGAGGAAATGACTTCTGTGGGACCAGATGTTTCTCTTCATAGAGAAGAACCTA
CGACCAAAGAGATTTCCCCAAGTAATGTATCTAAAACAGCTATAGATGATTCACTAAGCAGAGAAAAGAG
AGAGAAAGAACTGCTAAGGCAAATCCTACGGGCCCCCTTACTGCATCAGGAAAAAGGTGCTGGAAAAGAA
CACACTAAGAGTCATCAACAGCCTTCTAAAGGAGGAAACAGTGGTCCCTCTGGTCTCCCATCCCGCTCAG
AAGATAATGATGAAAATTCCCAGACCAGAAGAGATTCTGGGACATGTGCAGGTGGCATGGCCTCTGGAAA
TGGACAGTATCCTTGGAGGGATCACATGGCTGCGGTTGTAGGTGACCGTTCTAGTAGGTCACAGCCTAGG
GAAACCAGTGGGACAACTGGGTCAGACTGCCAAAACCCGACTGATAAAATGCTCTCTGACTCAGAAAGCC
AAGCCTTTGCTCTAACACCAGCATTGTGTAAGCTGCAGCTTGCTGAAGAGGCTCAGCCAGGGGGAGCAGG
TCTGCAGTCAGAAGCCAGCCAGGCAGGAAGTCAGGAAACAAATACAGCAGAGATGAGGAAGGTTGAAGAT
GAAGAACACATGTTGACACGGGATCAAACTTTACTTCCTAGAGGAAATAACAAAAATAAAACCAACACAG
ATGAAACAAAAGACAGATACTCAGGTAAACACAGATTGGCAGCCATATCTAAAGCAAGCAAAAGAATCCC
AGCTAAGGATTTAAGTCCCAGAAAACACGTAGCTACTATCTTCTCCCAAAGTGAAAGCGAATCTGGCTTT
AGGAGGCTCTCTCTTTATAGGCCAGAGGACAACCCACTATCCCCTGAACCTACTGTAAAAGCCACAGAGT
CCACAGATGAAAGCAGCCAGATGAATGTGGACAAGTCTGAGACCCTTCTCCAGGAGACCACAGTATCCAG
CCCTGGACCTCCTGGTCAGCCTTGCCATCAAAAGTCTGCTAGCATTTTACAACCACATCTGAATGGGTCG
CCCGGTGTCTTAGAAACACCACCAAAGAGCGAGGGTTCTAAAACTCAGATTTCAGGGGAGTTGGGAGCCC
CAGCTCAGCTTACACTAACCAGCCCCTTAGAAAAAGGCGCTGGCCATCAGCAGAGGTTAAGTCCTCCTTT
CCCCTTAGAGCCTACTCAGAAATCTACGATAAACTCCCATTGTCAGCTGCGGCACCGGAGTGCCCCATCT
CCAGAGTCAGAACCTGAGCCACATCTCTATAGGTCAAAGAGTTTAAAAAACTTTAACGTGCAAAGCGACC
TGTTGTGTGCAAGCCACCCCCCGAAAGCCAGGGGGCGCCACTTCTCAGAAAACACTTCCATTGACAATGC
TCTGAGTCAACTGTCCCTCGAAGATGGCTCCTTCCCCAACAGTGGGTACAATCGAAGATTCAAATCTTCT
TCCGAGCTTCCTGCATCTTACGAAAGTGAAAGCTGGACTTCGTATAGCAATAGGACACGAGGTCCCAAGT
CCACCTCATCCATTTCCAGGCCTATTGACTATGGAATTTTTGGGAAAGAGCAGCAGTTGGCTTTCTTGGA
GAACGTCAAACGCTCACTCACACAGGGAAGATTATGGAAGCCAAGTTTCCTCAAGAACCCTGGCTTCCTC
AAGGATGATGTTCTTAATGCTTCCAACCTGTCACAGTCAGAGCTGGTAAATTCTCCAGCAGGTCAGGCGC
CAGAAGATGGTGTATTTCCAAGTGAGCCGCTTAACATCTACAAGGACGACCCAGTGGAGCCACTGGTCTC
AGACTGGGACACAGACACAACCACAGACGACGAGTACTACCTGGATGAAAAGGATAAAGAGTCAGAACTA
TGA

Translation (1960 aa):
MTKVPQGFDFSFLNEEEARKILQVLERNEELRRAEKDRISKLQKTKRDIRWLQGATGEWFEEIQRKKFCN
ETDVNQMLKPPLTYRLQKGMAKNDPMELQTPRSKSLINQKPSVSSRMSFRSSFASLFSFRRPAKETLKLQ
SPRPNRCDERVRPSASVRGTASAKIYNSPVGNQPVASVFVPKPAIMREESGMPPPWDASLLESEFFQVLD
DLDNKLAQEQSSGLMNTRVPFNYGSRTQFKLSHRNSHGHSTGRQQNYHSETSNMSIYNILRPGTPREGFK
TFSPRTKTIYDMYRTREPRVLKEDFMQKNAFGSASLCFDSRQRSASPATGSFTARSLHFPADTQNKSSFT
PVRHQQSPKRTPLSSIIWNRSDASRHRQNQEESLGVQAPMDIDPEEQYVSPRCFQESRRYEMCHSQNAYQ
SYPLNVPVANAMSPDTLENSENMPFYRQSNPFARSFFSSTFRQSREQRFGQNSFWSRQEEYSSWSDFPQS
RGPFPSSDKDFEMFSVEANRAPSVCSQGVPSQHWRSHSSGHGTYVFRGREDSHCWRSDFQTSPLESMDTS
HVNENQHPPHFVTPVGFSITDSSCHLQSSRLDSQQGYFPVEEAVDEDPYLCGKAQTPASSFRTPFPLSPD
DGRESQSSSFPDSTATLQKIIPNKPDFLPIRNCTEVPVACSHSTDSLSLTDTQPNIPVTETNSEKDMDVS
VSKDEQLNKTGQKSRPTGLPQYVLHTVISNDLPDFQNAHSRDSAQNDRYGFNAPATERSRRSPRVFSRKG
TSQIHTTQRDQSNKLSKNKCFGGDRTLDSAASPPFIQESGTATSLPSPNQGCHQKTGSNEESSNTIKNSH
WCFESTANQKSQPSREPALLDLEQSLSTHSTNDSKLAPGHSISRAPLHVASDAPQESFLDARLVPSTTVF
SRSLSDQDPGQEQREEKDKATKSQDNQLAVNSTDNQESHDSPALPHDAVHCHPYSPFKNGRGKGRVRRRV
SCIEKLTKTERAAAPTREGSGCAEDQRSIKDPELSTVYCTLPRKPASFLIHSRQQESKGTVASVRNGPLP
FQIKNKAEVPTGKSTSDKPSSPESVSDAANAVSGTPKATKKMTDMKAIRSASVRKGPLPFLIKRAISCPS
GEPCSLAESDDRQKSSVLGMDASPVIPRPGGRIFNSLEGEPSFRESAFSEKELAQEHTGKDRELRAPRMG
LFNPSKKTPERLCATGSGKESGRALHKFKTTSMFSVSGDEENVNCLEVVSIYYTLPRKPSKKFCSLLQQY
TQGTDSLRDAFQGETEALPNALEIDELNCPAQVQSGIPPPQDPKMQVDSAPCCLSHSPESKDVSQLPDRE
TSKSTLEEMTSVGPDVSLHREEPTTKEISPSNVSKTAIDDSLSREKREKELLRQILRAPLLHQEKGAGKE
HTKSHQQPSKGGNSGPSGLPSRSEDNDENSQTRRDSGTCAGGMASGNGQYPWRDHMAAVVGDRSSRSQPR
ETSGTTGSDCQNPTDKMLSDSESQAFALTPALCKLQLAEEAQPGGAGLQSEASQAGSQETNTAEMRKVED
EEHMLTRDQTLLPRGNNKNKTNTDETKDRYSGKHRLAAISKASKRIPAKDLSPRKHVATIFSQSESESGF
RRLSLYRPEDNPLSPEPTVKATESTDESSQMNVDKSETLLQETTVSSPGPPGQPCHQKSASILQPHLNGS
PGVLETPPKSEGSKTQISGELGAPAQLTLTSPLEKGAGHQQRLSPPFPLEPTQKSTINSHCQLRHRSAPS
PESEPEPHLYRSKSLKNFNVQSDLLCASHPPKARGRHFSENTSIDNALSQLSLEDGSFPNSGYNRRFKSS
SELPASYESESWTSYSNRTRGPKSTSSISRPIDYGIFGKEQQLAFLENVKRSLTQGRLWKPSFLKNPGFL
KDDVLNASNLSQSELVNSPAGQAPEDGVFPSEPLNIYKDDPVEPLVSDWDTDTTTDDEYYLDEKDKESEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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