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Report for CCDS23194.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23194.1 Public Mus musculus 9 Skic8 23 108 98 CCDS HistoryNCBI Gene:66317Re-query CCDS DB by CCDS ID:23194.1Re-query CCDS DB by GeneID:66317See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23194.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051822.12 ENSMUSP00000056359.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051822.12Link to Ensembl Protein Viewer:ENSMUSP00000056359.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000051822Re-query CCDS DB by Protein ID:ENSMUSP00000056359
Original member Current member EBI ENSMUST00000121204.7 ENSMUSP00000113560.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121204.7Link to Ensembl Protein Viewer:ENSMUSP00000113560.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121204Re-query CCDS DB by Protein ID:ENSMUSP00000113560
Original member Current member NCBI NM_001025375.2 NP_001020546.1 Accepted alive Link to Nucleotide Sequence:NM_001025375.2Link to Protein Sequence:NP_001020546.1Re-query CCDS DB by Nucleotide ID:NM_001025375Re-query CCDS DB by Protein ID:NP_001020546Link to BLAST:NP_001020546.1
Original member Current member NCBI NM_023191.3 NP_075680.1 Accepted alive Link to Nucleotide Sequence:NM_023191.3Link to Protein Sequence:NP_075680.1Re-query CCDS DB by Nucleotide ID:NM_023191Re-query CCDS DB by Protein ID:NP_075680Link to BLAST:NP_075680.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020546.1 305 Q9ERF3 305 100% 0 0
NP_075680.1 305 Q9ERF3 305 100% 0 0

Chromosomal Locations for CCDS 23194.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 54717346 54717435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54719251 54719329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54720260 54720352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54722834 54722927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54724051 54724144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54724326 54724474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54727589 54727761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54728170 54728275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54730634 54730661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54731387 54731398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGACCAACCAGTACAGTATTCTCTTCAAGCAAGAGCAAGCCCATGATGATGCCATATGGTCAGTTGCCT
GGGAGACAAACAAAAAGGAAAACATTGAAACAGTGGTCACAGGATCCCTGGATGACCTGGTGAAGGTCTG
GAAATGGCGTGATGAGAGGCTGGAGCTCCAGTGGAGCCTGGAGGGACATCAGCTCGGGGTGGTGTCTGTG
GACATCAGCCACACTCTTCCCATTGCTGCATCCAGCTCTCTAGACGCTCATATTCGCCTCTGGGACTTGG
AAAATGGCAAACAGATGAAGTCTATAGATGCAGGACCAGTGGATGCCTGGACTTTGGCATTTTCTCCTGA
CTCCCAGTATCTGGCCACAGGAACTCACATGGGGAAAGTGAACATTTTTGGTGTGGAAAGTGGAAAAAAA
GAATATTCTTTGGACACTAGAGGAAAATTCATCCTTAGTATTGCATATAGTCCTGATGGGAAATACCTGG
CCAGCGGAGCCATAGACGGAATCATCAATATTTTTGACATTGCAACTGGAAAGCTTTTGCATACGCTGGA
AGGCCATGCGATGCCCATTCGCTCCTTGACCTTTTCCCCTGACTCCCAGCTCCTTGTCACGGCTTCAGAT
GATGGCTACATCAAGATCTATGATGTACAACATGCCAATTTGGCTGGCACACTGAGTGGCCATGCGTCCT
GGGTGTTGAATGTTGCGTTCTGTCCTGATGACACTCACTTTGTCTCCAGTTCATCTGACAAAAGTGTGAA
GGTTTGGGATGTTGGAACAAGGACCTGTATTCACACCTTCTTTGATCACCAGGATCAGGTTTGGGGAGTA
AAATATAATGGAAATGGATCAAAAATTGTATCTGTTGGAGATGACCAGGAAATTCATGTCTATGACTGCC
CAATTTAA

Translation (305 aa):
MTNQYSILFKQEQAHDDAIWSVAWETNKKENIETVVTGSLDDLVKVWKWRDERLELQWSLEGHQLGVVSV
DISHTLPIAASSSLDAHIRLWDLENGKQMKSIDAGPVDAWTLAFSPDSQYLATGTHMGKVNIFGVESGKK
EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD
DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCIHTFFDHQDQVWGV
KYNGNGSKIVSVGDDQEIHVYDCPI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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