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Report for CCDS23223.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23223.1 Public Mus musculus 9 Cox5a 23 108 98 CCDS HistoryNCBI Gene:12858Re-query CCDS DB by CCDS ID:23223.1Re-query CCDS DB by GeneID:12858See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23223.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000090.7 ENSMUSP00000000090.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000090.7Link to Ensembl Protein Viewer:ENSMUSP00000000090.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000000090Re-query CCDS DB by Protein ID:ENSMUSP00000000090
Original member Current member NCBI NM_007747.2 NP_031773.2 Accepted alive Link to Nucleotide Sequence:NM_007747.2Link to Protein Sequence:NP_031773.2Re-query CCDS DB by Nucleotide ID:NM_007747Re-query CCDS DB by Protein ID:NP_031773Link to BLAST:NP_031773.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031773.2 146 P12787 146 100% 0 0

Chromosomal Locations for CCDS 23223.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 57521328 57521415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57528956 57529072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57530241 57530362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57531669 57531782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (441 nt):
ATGCTCGCCGCTGCCCTCCGTCGCTGTACCGCAGCCGCGGCTGCCCGAGGCCTCCTGCACCCCGCCTCGG
CTCCCAGCCCCGCCGCCGCTGTCTGTTCCATTCGCTGCTATTCTCATGGGTCACACGAGACAGATGAGGA
GTTTGATGCTCGCTGGGTGACATATTTCAACAAGCCAGACATTGATGCCTGGGAATTGCGTAAAGGGATG
AATACACTTGTTGGCTATGATCTGGTTCCTGAGCCCAAAATCATTGATGCTGCATTGCGAGCATGTAGAC
GGTTAAATGATTTTGCTAGTGCTGTTCGCATCTTGGAGGTTGTTAAGGACAAAGCAGGACCTCATAAGGA
AATCTATCCCTATGTCATCCAGGAACTTAGACCAACTTTAAATGAATTGGGAATCTCCACTCCAGAGGAG
CTGGGCCTTGACAAAGTGTAA

Translation (146 aa):
MLAAALRRCTAAAAARGLLHPASAPSPAAAVCSIRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGM
NTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEE
LGLDKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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