NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23271.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23271.1 Public Mus musculus 9 Aagab 23 108 98 CCDS HistoryNCBI Gene:66939Re-query CCDS DB by CCDS ID:23271.1Re-query CCDS DB by GeneID:66939See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23271.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041551.8 ENSMUSP00000048595.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041551.8Link to Ensembl Protein Viewer:ENSMUSP00000048595.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041551Re-query CCDS DB by Protein ID:ENSMUSP00000048595
Original member Current member NCBI NM_025857.3 NP_080133.1 Accepted alive Link to Nucleotide Sequence:NM_025857.3Link to Protein Sequence:NP_080133.1Re-query CCDS DB by Nucleotide ID:NM_025857Re-query CCDS DB by Protein ID:NP_080133Link to BLAST:NP_080133.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080133.1 316 Q8R2R3 316 100% 0 0

Chromosomal Locations for CCDS 23271.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 63602699 63602771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63616686 63616876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63616988 63617084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63617508 63617597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63619148 63619231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63635305 63635387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63636384 63636483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63639040 63639144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63639593 63639642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 63640207 63640284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGGCTGCCGGTGTACCCTGCGCGCTGGTTACCAGCTGCTCCGCCACCTTCACCGGGGACCGGCTGGTGC
AACATATCCTTGGGACAGAAGATGCTGTTGTGGAAGCAACTTCCAGCGATGCTGTGAGGTTTTACCCCTG
GACCATCGATAACAAGTACTATTCCGCAGAGATCAACCTGTGCGTGGTGCCAAGCAAGTTCCTGGTCACT
GCTGAGATTGCCGAGTCAGTCCAGGCGTTTGTAGTTTACTTTGACAGCACACAGAAATCAGGTCTTGACA
GCGTCTCCTCGTGGCTCCCTCTGGCAGAAGCATGGCTAGCTGAGGTGATGATCCTGGTCTGTGATAGAGT
GTGTGACGATGGAATAAACCGACAACAGGCTCAAGAGTGGTGCATCAAACATGGCTTTGAGTTGGTGGAA
CTCAACCCAGAGGAGCTGCCCGAGGAGGACGATGACTTCCCTGAATCTACAGGTGTAAAGCGGATTGTAC
AAGCATTGAATGCCAATGTCTGGTCCAATGTCGTGATGAAGAGTGACAGGAGCCAGGGCTTCAGCCTTCT
CAACTCACTGGCTGGGGCAAACCGCAGAGTTGCATCAGCAGAGAGCTGTCACTCTGAGCAGCAGGAGCCG
TCGCCAACAGCTGAGAGGACAGAGTCCCTCCCTGGCCATCACAGTGGTGCGTGTGGCTCAGCAGGCGCAC
AGGTTGACAGCATTGTCGACCCCATGTTAGACCTGGATATTCAAGAACTAGCCAGTCTTACCACTGGAGG
AGGTGATCTGGAGAACTTCGAGAGACTCTTTTCAAAGTTAAAAGAAATGAAAGACAAGGCTGCGACGCTT
CCTCATGAGCAAAGAAAGTTGCATGCAGAAAAGGTGGCCAAAGCCTTCTGGATGGCAATAGGAGGGGACC
GAGATGAGATCGAGGGCCTTTCTTCTGATGACGAGCACTAA

Translation (316 aa):
MAAGVPCALVTSCSATFTGDRLVQHILGTEDAVVEATSSDAVRFYPWTIDNKYYSAEINLCVVPSKFLVT
AEIAESVQAFVVYFDSTQKSGLDSVSSWLPLAEAWLAEVMILVCDRVCDDGINRQQAQEWCIKHGFELVE
LNPEELPEEDDDFPESTGVKRIVQALNANVWSNVVMKSDRSQGFSLLNSLAGANRRVASAESCHSEQQEP
SPTAERTESLPGHHSGACGSAGAQVDSIVDPMLDLDIQELASLTTGGGDLENFERLFSKLKEMKDKAATL
PHEQRKLHAEKVAKAFWMAIGGDRDEIEGLSSDDEH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH