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Report for CCDS23284.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23284.1 Public Mus musculus 9 Hacd3 23 108 98 CCDS HistoryNCBI Gene:57874Re-query CCDS DB by CCDS ID:23284.1Re-query CCDS DB by GeneID:57874See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23284.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036615.6 ENSMUSP00000044955.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036615.6Link to Ensembl Protein Viewer:ENSMUSP00000044955.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000036615Re-query CCDS DB by Protein ID:ENSMUSP00000044955
Original member Current member NCBI NM_021345.2 NP_067320.2 Accepted alive Link to Nucleotide Sequence:NM_021345.2Link to Protein Sequence:NP_067320.2Re-query CCDS DB by Nucleotide ID:NM_021345Re-query CCDS DB by Protein ID:NP_067320Link to BLAST:NP_067320.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067320.2 362 Q8K2C9 362 100% 0 0

Chromosomal Locations for CCDS 23284.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 64988453 64988529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64990317 64990448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64990974 64991080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64992257 64992369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 64998195 64998322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65000981 65001091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65004257 65004308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65005608 65005772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65006561 65006634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65010474 65010516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65021457 65021543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1089 nt):
ATGGAGACTCAAGTGCTGACGCCGCATGTCTACTGGGCTCAGCGACACCGCGAGCTGTATCTGCGCGTGG
AGCTGAGTGACGTGCAGAACCCTGCTATCAGCATCACAGACAATGTGCTGCATTTCAAAGCTCAGGGACA
CGGTGCCAAAGGAGACAATGTCTATGAATTTCACCTGGAGTTCTTAGACCTTGTGAAGCCAGAGCCGGCG
TACAGGCTGACCCAGAGGCAGGTGAACATCACAGTCCAGAAGAAGGGGAGTCATTGGTGGGAAAGACTCA
CCAAGCAAGAGAAGCGCCCATTGTTTTTGGCCCCTGACTTTGATCGCTGGCTGGATGAATCTGATGCGGA
AATGGAGCTGAGAGCCAAGGAGGAAGAACGCCTAAATAAACTCAGACTAGAAAGGGAAGGCTCCCCTGAA
ACTCTTACAAACTTGAAGAAAGGGTACCTGTTCATGTACAACCTTGTGCAGCTCCTGGGGTTCTCCTGGA
TCTTTGTCAACCTCACAGTGCGGTTCTTTATTTTAGGAAAAGAGTCCTTCTATGACACGTTCCACAATGT
GGCTGACATGATGTATTTCTGCCAGATGCTGGCACTAGTGGAAACCCTCAATGCTGCGATTGGGGTCACA
AGTACCCCGGTGCTACCTGCTCTCATCCAGTTTCTTGGAAGAAATTTTATTCTGTTTCTTGTTTTCGGCA
CCATGGAAGAAATGCAAAACAAAGCTGTGGTTTTCTTTGTGTTTTATTCCTGGAGCGCAATTGAAATCTT
CAGGTATCCCTTCTACATGCTCTCCTGCATTGACATGGACTGGAAGGTGCTCACGTGGCTCCGTTACACT
ATGTGGATTCCGTTATATCCCCTGGGATGTTTGTCAGAAGCTGTGGCAGTGATCCAGTCCATTCCAGTAT
TCAACGAGTCGGGAAGGTTCAGTTTTACTTTGCCATATCCAGTGAAGATGAAAGTCAGATTTTCCTTCTT
CCTTCAAGTTTATCTCGTAATGTTATTTTTAGGGTTATATATTAATTTTCGTCACCTTTATAAACAGCGC
AGGAGGCGGTATGGACAAAAGAAGAAAAAGCTCCACTAA

Translation (362 aa):
METQVLTPHVYWAQRHRELYLRVELSDVQNPAISITDNVLHFKAQGHGAKGDNVYEFHLEFLDLVKPEPA
YRLTQRQVNITVQKKGSHWWERLTKQEKRPLFLAPDFDRWLDESDAEMELRAKEEERLNKLRLEREGSPE
TLTNLKKGYLFMYNLVQLLGFSWIFVNLTVRFFILGKESFYDTFHNVADMMYFCQMLALVETLNAAIGVT
STPVLPALIQFLGRNFILFLVFGTMEEMQNKAVVFFVFYSWSAIEIFRYPFYMLSCIDMDWKVLTWLRYT
MWIPLYPLGCLSEAVAVIQSIPVFNESGRFSFTLPYPVKMKVRFSFFLQVYLVMLFLGLYINFRHLYKQR
RRRYGQKKKKLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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