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Report for CCDS2330.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2330.1 Public Homo sapiens 2 KCTD18 24 110 108 CCDS HistoryNCBI Gene:130535Re-query CCDS DB by CCDS ID:2330.1Re-query CCDS DB by GeneID:130535See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2330.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359878.8 ENSP00000352941.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359878.8Link to Ensembl Protein Viewer:ENSP00000352941.3Re-query CCDS DB by Nucleotide ID:ENST00000359878Re-query CCDS DB by Protein ID:ENSP00000352941
Original member Current member EBI ENST00000409157.5 ENSP00000386751.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409157.5Link to Ensembl Protein Viewer:ENSP00000386751.1Re-query CCDS DB by Nucleotide ID:ENST00000409157Re-query CCDS DB by Protein ID:ENSP00000386751
Original member Current member NCBI NM_001321547.2 NP_001308476.1 Accepted alive Link to Nucleotide Sequence:NM_001321547.2Link to Protein Sequence:NP_001308476.1Re-query CCDS DB by Nucleotide ID:NM_001321547Re-query CCDS DB by Protein ID:NP_001308476Link to BLAST:NP_001308476.1
Original member Current member NCBI NM_152387.4 NP_689600.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152387.4Link to Protein Sequence:NP_689600.2Re-query CCDS DB by Nucleotide ID:NM_152387Re-query CCDS DB by Protein ID:NP_689600Link to BLAST:NP_689600.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308476.1 426 Q6PI47-1 426 100% 0 0
NP_689600.2 426 Q6PI47-1 426 100% 0 0

Chromosomal Locations for CCDS 2330.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 200490100 200490616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200493172 200493274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200497753 200497847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200498891 200499084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200504748 200504959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200506857 200507016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1281 nt):
ATGGAAGGCCACAAGGCAGAAGAAGAGGTGCTAGATGTTCTCCGACTGAACGTGGGTGGCTGTATTTACA
CAGCCCGGCGGGAGTCCTTGTGCCGCTTCAAGGACTCCATGTTGGCATCTATGTTCAGTGGTCGCTTTCC
TCTAAAAACAGATGAGTCAGGGGCTTGTGTTATTGACCGTGATGGACGTCTATTTAAATACCTTTTGGAT
TACCTTCATGGAGAAGTTCAGATTCCCACAGATGAGCAAACCCGCATCGCCCTACAGGAAGAGGCTGATT
ACTTTGGCATCCCTTATCCATACAGCCTGTCTGACCATTTGGCCAATGAAATGGAGACATATTCTTTAAG
GTCAAATATAGAACTTAAAAAGGCTTTAACAGACTTCTGTGATTCATATGGCTTAGTCTGCAATAAACCA
ACAGTTTGGGTTCTCCACTATCTTAACACATCTGGTGCAAGCTGTGAGAGTAGAATTATTGGTGTATATG
CCACAAAAACTGATGGAACAGACGCTATTGAAAAGCAGCTGGGAGGAAGAATTCACAGCAAAGGCATTTT
TAAAAGAGAGGCGGGAAATAATGTTCAGTACATTTGGAGCTATTATTCAGTAGCAGAGTTGAAGAAAATG
ATGGATGCCTTTGATGCTTGGGAAGGAAAAGGTGTTAGCTACTGGCGGGTGCCTCATGAGCTGATAGAGT
GTTGGACTCTAGAAGAACGGCCTTTACTTGGAAGCCTGCGTCACATGGCTCCAATTCGAAAGAGGCGACT
GATAACGTTCAATGAAGCGGACGAAAGTGTGAACTATAAGACTGGTCCTAAGCCAGTTAGATTTTTGGGC
CCTTCCACAAGTACCCAAATTAAAGTCAAGAACTCGGCCTCAGTCACGGTGTCTCCAGCCAGTGCCATCC
AGACGTCGGCTGGGGCGACAGCAAACCGGTTTCAAAGTGGTAGCCGCAGAAAGGCAGCTCAGCGCTCTGC
ACCTTCCAGAGCCACGGCCCTGGTGGGCACGGGGGCACCTGGGCATCCTCAGGCTTCCCCTGGGGCTGCG
AGCGCTGAAAATGGAGGCACGCACTTACCTCCAGCTAAGGTGCTACTCTCCGACAAGAAGCCTACACCCC
AGCGGGTGATAAAGCTGAAGAGGACTCCGCTGTGCGCCACCGCGCCTTGCCTGCCCTCCCCCACGGCCAC
GAGGCAGGCCAACTCCCTCAAGCCGCTTCCCGGCGAAGCTGCCCGTGCCTTGGGAGTGCGGACTGAGAAC
GGGAAGAACAAGGGAAATTGA

Translation (426 aa):
MEGHKAEEEVLDVLRLNVGGCIYTARRESLCRFKDSMLASMFSGRFPLKTDESGACVIDRDGRLFKYLLD
YLHGEVQIPTDEQTRIALQEEADYFGIPYPYSLSDHLANEMETYSLRSNIELKKALTDFCDSYGLVCNKP
TVWVLHYLNTSGASCESRIIGVYATKTDGTDAIEKQLGGRIHSKGIFKREAGNNVQYIWSYYSVAELKKM
MDAFDAWEGKGVSYWRVPHELIECWTLEERPLLGSLRHMAPIRKRRLITFNEADESVNYKTGPKPVRFLG
PSTSTQIKVKNSASVTVSPASAIQTSAGATANRFQSGSRRKAAQRSAPSRATALVGTGAPGHPQASPGAA
SAENGGTHLPPAKVLLSDKKPTPQRVIKLKRTPLCATAPCLPSPTATRQANSLKPLPGEAARALGVRTEN
GKNKGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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